Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1479 ATGTCCGATACCCAACAAACCCTAATGCCCCTTCACTCCCCCGACCCCGACGATAACGACGAATCCCCTCCTAACCAACCCCAACCCGCATCCCCTGACCCAACCCGAACCGGAACCGGAACCGCCATCGCCACCGCCCCTTCCCTCCTCCACCTCTCCTTCAACCAGGACTCTGGCTGCTTCGCCGCCGGCACCGACCGCGGCTTCCGCATCTACAACTGCGATCCTTTCCGCGAGATATTCCGCCGCGACTTCGGCCCAGGCGGCGGCACCTCTCTCGTTCACATGCTCTTCCGGTGCAACATCCTCGCCTTCGTCGGCGGCGGACCCGACCCTCGCCACCCTCCGAACAAGGTCATGATCTGGGACGACCACCAGTCGCGGTGCATTGGCGAGCTCTCATTCCGCTCCGAGGTCAAAGGCGTTCGCCTCCGAAGAGACCGAATCGTTGTGGTTCTCGCGCACAAGATTTTCGTGTACAATTTTGCCGACCTGAAGGTTCTTCACCAGATTGAGACAATTGCGAACCCTAAGGGTTTGTGCGAGGTTTCGCACTTGTCCGGGACGATGGTTCTTGCATGCCCTGGGTTGCAGAAGGGGCAGGTTAGAGTTGAGCATTACGCCTCAAAGAGGACAAAATTCATCATGGCTCATGATTCGAGGATCGCGTGCTTCTCGCTCACGCAGGATGGGAGGTTGCTCGCTACTGCGAGCAGTAAAGGAACCTTGGTGAGGGTTTTCAATACGTTAGATGGGTCCTTGTTGCAAGAGGTACGGAGAGGTGCAGACCGTGCGGAAATATACAGCCTTGCCTTCTCTCCTACTGCACAGTGGCTAGCTGTTTCGAGTGATAAGGGGACCGTTCATGTCTTCAACTTAAAGGTTGATTCTGGACTTTTGGGGCTTGACAGATCGAATAGTTCATCTGAGTCAAATCCTAGTTCCCCAACAGCAGTTTCATCTCTTAAATTTATGAAAGGTGTTTTACCCAAGTACTTTAGCTCAGAGTGGTCTGTGGCTCAGTTTCGCCTGCAGGAAGGTTTGCAGCATATTGTTGCCTTTGGCCATCAAAAGAATACAATTGTTATACTTGGCATGGATGGCAGCTTTTATCGATGCCAGTTTGATTCTGCAAATGGAGGAGAGATGACCCAACTTGAATATTACAATTTCCTCAAGACAGATGAGACATTCTAA 1197 0.5288 MSDTQQTLMPLHSPDPDDNDESPPNQPQPASPDPTRTGTGTAIATAPSLLHLSFNQDSGCFAAGTDRGFRIYNCDPFREIFRRDFGPGGGTSLVHMLFRCNILAFVGGGPDPRHPPNKVMIWDDHQSRCIGELSFRSEVKGVRLRRDRIVVVLAHKIFVYNFADLKVLHQIETIANPKGLCEVSHLSGTMVLACPGLQKGQVRVEHYASKRTKFIMAHDSRIACFSLTQDGRLLATASSKGTLVRVFNTLDGSLLQEVRRGADRAEIYSLAFSPTAQWLAVSSDKGTVHVFNLKVDSGLLGLDRSNSSSESNPSSPTAVSSLKFMKGVLPKYFSSEWSVAQFRLQEGLQHIVAFGHQKNTIVILGMDGSFYRCQFDSANGGEMTQLEYYNFLKTDETF* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1479 398 Gene3D - 49 379 IPR015943 GO:0005515
Ahy19g1479 398 MobiDBLite consensus disorder prediction 1 41 - -
Ahy19g1479 398 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 25 398 - -
Ahy19g1479 398 PANTHER AUTOPHAGY-RELATED PROTEIN 18A-LIKE ISOFORM X1 25 398 - -
Ahy19g1479 398 SUPERFAMILY WD40 repeat-like 48 294 IPR036322 GO:0005515
Ahy19g1479 398 Pfam WD domain, G-beta repeat 261 292 IPR001680 GO:0005515
Ahy19g1479 398 SMART WD40_4 39 73 IPR001680 GO:0005515
Ahy19g1479 398 SMART WD40_4 251 292 IPR001680 GO:0005515
Ahy19g1479 398 SMART WD40_4 208 248 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1479 Ahy-Chr19 39480085 39483733 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1479 K22991 - gmx:100787427 647.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1479 19 39480085 39483733 Ahy19g1479 19 39480085 39483733 ECH
Ahy19g1479 19 39480085 39483733 Ahy9g1195 9 31344626 31348247 hybridization
Ahy16g0229 16 2512640 2515376 Ahy19g1479 19 39480085 39483733 PCT
Ahy6g1091 6 15728207 15730894 Ahy19g1479 19 39480085 39483733 PCT