Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1012 ATGTTTACCATTTTCTTCCTCTTCGCCCTTGTCTTCTCCGGTTCCCACGTGGCGGTTCAAGGCTACTGCGTCGCAGACCTTGGCGCCGCACAAACCACCACAGGGTATCCCTGTAAACCGACCAAGTCAGTAAAAATAGAAGACTTTTCAACCACCCTTCAGCCTCAAAACACCAACTTCTCCAAGGCCTTCAACATCTCGTTATCCCCGGCATTCGTCGGACAAATACCGGGGCTTAACGGGCTGGGCTTCGCCGCGGCGAAGCTAGATCTGTTTGCGGGGGGTATAGTCCCGCTCCACTCGCATCCAGATGCCTCCGAGATGCTTCTAGTGACAGACGGTAAGATAACTGCCGGGTTCATATCACCAGATAACACGGTTTTTGTGAAGACAATAACAAAGGGTGACGTCATGGTTTTGCCACAAGGGTTGTTACATTTTCAGTTAAATTCTGGAGAGGGAAGTGCCACAGCTTTTCTTGCTTTCAGTAGCCCAAATCCGAGCGCACAGTTCGTTGATGTTGCGTTGTTTGCAAGCGCTCTGAATTCTGCATTTGTGACTAAGACTACGTATATTAGTCCTGCCGAAGTTAAGAGACTTAAGGGTGTTTTTGGTGGTCAAGGATAG 627 0.4928 MFTIFFLFALVFSGSHVAVQGYCVADLGAAQTTTGYPCKPTKSVKIEDFSTTLQPQNTNFSKAFNISLSPAFVGQIPGLNGLGFAAAKLDLFAGGIVPLHSHPDASEMLLVTDGKITAGFISPDNTVFVKTITKGDVMVLPQGLLHFQLNSGEGSATAFLAFSSPNPSAQFVDVALFASALNSAFVTKTTYISPAEVKRLKGVFGGQG* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1012 208 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 4 204 - -
Ahy19g1012 208 SMART Cupin_1_3 50 198 IPR006045 -
Ahy19g1012 208 Pfam Cupin 54 198 IPR006045 -
Ahy19g1012 208 CDD cupin_OxOx 19 204 - -
Ahy19g1012 208 Gene3D Jelly Rolls 16 207 IPR014710 -
Ahy19g1012 208 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 4 204 - -
Ahy19g1012 208 SUPERFAMILY RmlC-like cupins 60 205 IPR011051 -
Ahy19g1012 208 PRINTS Germin signature 163 178 IPR001929 GO:0030145
Ahy19g1012 208 PRINTS Germin signature 100 120 IPR001929 GO:0030145
Ahy19g1012 208 PRINTS Germin signature 130 150 IPR001929 GO:0030145
Ahy19g1012 208 ProSitePatterns Germin family signature. 95 108 IPR019780 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1012 Ahy-Chr19 16147257 16148147 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1012 1 206 Miscellaneous Gene Families AT5G20630 49.515 1.31e-63 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1012 - - adu:107464848 251.906
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1012 19 16147257 16148147 Ahy19g1012 19 16147257 16148147 ECH
Ahy19g1012 19 16147257 16148147 Ahy9g0773 9 12296331 12297319 hybridization