Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g2554 ATGGCCGTTCCCTTCTTCACAACAACATTTGTTCCATCTCTTTCCTCAAAAACCATCACTCCCATCACTCCTTCAAAGTCCACAATAGCCTTCATTCGCTTCCTCACATTCTCAACAATGAACTCATCGCCATCACCGTCATCACCATCGATCTACCACGTGCCAGACCTAGGTGCCAACGACATGGACCGTGTGGCAGACCACACTTTCCGAACCTACACTTCGAATAACAATGCAAATGTGGCCAAGAGAAGTGGTAAAGGTTCGGCAATTGTGTGGTTCAGAAATGATCTGAGGGTGTTAGACAATGAAGTTCTCTACAAAGCGTGGCTCTCTTCGGAAACTGTCTTACCCGTTTTCTGTGTTGATCCTCGCCTCTTTTCCACCACTTACCACTTTGGTTTTCCCAAAACTGGAGCATTGAGAGCTCAATTTTTCGTCGAATGCTTGGCCGACTTGAGGAAGAACTTGACAAAATTCGGACTTAATTTGCTTATACAACACGGAAAGCCTGAAGATATTCTTCCTTCTCTAGCTAAAGCTTTCAAAGCTCATACAGTGTATGCCCAGAAAGAAACCTGCAGTGAGGAGCTGAACGTTGAAAGATTAGTCAGCAAAGGTCTTCGACAAGTAGCAATGCCATCCGGGGAATCTAGTAGTTCAACGAATTCAAACAACTTCCCCAAGTTACAATTGATTTGGGGTACCACCTTGTACCACATAGATGACCTTCCTTTTGATGCCGGTAGTTTGCCGGACGTGTATACTCAATTTCGTAAGACTGTCGAGGCGAAGTGTTCGATACGTCCGTGCATCAAACTTCCTGTGTTGCTTGGACCTCCTCCACTTGTTGAGGATTGGGGGTGTGTTCCTTCATTAGAGAAGCTGGGACTTAGCTCACAGAATGTTAGCAAGGGGATGAAATTTGTAGGAGGTGAAACTGCGGCGTTGAGCAGAGTATATGAATACTTTTGGAAGAAGGATTTGCTAAAGGTATATAAAGAGACCAGAAATGGAATGTTAGGACCTGATTACTCCACTAAGTTCTCACCATGGCTTGCATTTGGAAGCTTGTCTCCTCGTTTAATACACGAAGAGGTGAAGAGATATGAGAAGGAAAGGATAGCAAATGGTTCTACATACTGGGTCTTGTTTGAGTTGATATGGAGGGATTACTTCCGGTTTTTATCGGTGAAATATGGGAATTCAATTTTCTATTTAGGTGGTCCTAGGAAGGTTCAGCAGAAGTGGAGCCAAGACAAGATTTTGTTTGAATCATGGAGAGACGGCCGTACCGGATATCCTTTGATTGATGCCAATATGAAAGAACTATCAACAACAGGGTTTATGTCAAACCGAGGACGGCAGATTGTGTGTTCATTTCTTGTTCGTGATATGGGCATAGATTGGCGAATGGGAGCAGAGTGGTTCGAGACGTGTCTTCTGGATTATGATCCATGTTCTAATTATGGAAACTGGACTTATGGTTCAGGAGTTGGGAATGATCCAAGAGAAGATCGATATTTCAGCATTCCGAAACAAGCACAAACATATGATCCGGAAGGAGAATACGTTGCATACTGGTTGCCGCGATTACAAACAATTCCGAAAGAGAAAAGGAACTTTCCTGGAAATTTATACATCCGTCAAATTGTGCCTCTCAAGTATGGTAGACTCCAGAATGACGGCGCAAGAAGCAGCAATGATAGAAGGAATGACAGAAGATGGAACAGGAACTAA 1740 0.4362 MAVPFFTTTFVPSLSSKTITPITPSKSTIAFIRFLTFSTMNSSPSPSSPSIYHVPDLGANDMDRVADHTFRTYTSNNNANVAKRSGKGSAIVWFRNDLRVLDNEVLYKAWLSSETVLPVFCVDPRLFSTTYHFGFPKTGALRAQFFVECLADLRKNLTKFGLNLLIQHGKPEDILPSLAKAFKAHTVYAQKETCSEELNVERLVSKGLRQVAMPSGESSSSTNSNNFPKLQLIWGTTLYHIDDLPFDAGSLPDVYTQFRKTVEAKCSIRPCIKLPVLLGPPPLVEDWGCVPSLEKLGLSSQNVSKGMKFVGGETAALSRVYEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWLAFGSLSPRLIHEEVKRYEKERIANGSTYWVLFELIWRDYFRFLSVKYGNSIFYLGGPRKVQQKWSQDKILFESWRDGRTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGSGVGNDPREDRYFSIPKQAQTYDPEGEYVAYWLPRLQTIPKEKRNFPGNLYIRQIVPLKYGRLQNDGARSSNDRRNDRRWNRN* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g2554 579 Pfam DNA photolyase 90 269 IPR006050 -
Ahy18g2554 579 PANTHER CRYPTOCHROME DASH 79 556 - -
Ahy18g2554 579 MobiDBLite consensus disorder prediction 560 579 - -
Ahy18g2554 579 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 406 560 - -
Ahy18g2554 579 Gene3D - 236 405 - -
Ahy18g2554 579 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 88 287 IPR036155 -
Ahy18g2554 579 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 88 221 IPR006050 -
Ahy18g2554 579 TIGRFAM crypto_DASH: cryptochrome, DASH family 90 531 IPR014133 GO:0003913|GO:0006281
Ahy18g2554 579 PRINTS DNA photolyase signature 432 448 IPR002081 -
Ahy18g2554 579 PRINTS DNA photolyase signature 491 505 IPR002081 -
Ahy18g2554 579 PRINTS DNA photolyase signature 452 470 IPR002081 -
Ahy18g2554 579 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 307 545 IPR036134 -
Ahy18g2554 579 MobiDBLite consensus disorder prediction 564 579 - -
Ahy18g2554 579 Pfam FAD binding domain of DNA photolyase 385 540 IPR005101 -
Ahy18g2554 579 Gene3D HUPs 49 235 IPR014729 -
Ahy18g2554 579 PANTHER CRYPTOCHROME 79 556 IPR002081 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g2554 Ahy-Chr18 127323154 127329163 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g2554 K25656 - gmx:100783312 897.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g2554 18 127323154 127329163 Ahy18g2554 18 127323154 127329163 ECH
Ahy18g2554 18 127323154 127329163 Ahy8g2333 8 45652789 45659287 hybridization