Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g1292 ATGCTCTACCTCCACCACCTCCGACACCGAACAAGAACCGCCGCAACACCACCACCACAAGCCCGACGACGGAATTTACAATTATGCCCTCGCACTCAACAACAACTACGACCTCTGGATCTCTCATCCTTCCTCCGTCTCCGAGCGCCGTTCCTCCCTCCTCCGCCACCTCGGTCTCGCCGCTCCCTCGCCCCGCGCGATAATGGGGACTCTTCCCGCTCCCCGTCGTCGGATCAGTTGACTGGACTGCGTCAGGGCTCCGCCGGAGGGATGCCCCGATCGAGCTCTGACGGTGCCGCGGATCCTCAGAATTCCGTTGGTGATGGTGTTGATGATGATGATGAAAAGCCTTGTGGTTCTTGTTCGCTTTCTCGTTCTTCTTGTCGTTGCTGTCGTTCTTGTTCGTCTTCTTCTTCCATTCTTTCTATTCGTTCGGCCGTACCGGAGGCCGGAAAATATGTAAATAGCCGGAATCGTCGCGGGGGCAGTGTTGGTGGTGGCGGTGGAAATGGCGGGTCCCCCTGGAAGCCTCCTTCGGGGAGGAATGGAAAAAGTGTGGATTTTGGGCAGAACGGGTCCATGGTACCGGAGAATGTCGCCGGTGAGGTGGTTGCCGTGGCGGCAGAGGCAGTGGCTAGTGGGGATTATAATGAGGTCAATGAGGAGGCTTGCACCATAAGGGATCTTGACAATGGGAAAGAGTTTGTGGTGAAAGAGTTTAGAGAAGATGGCATGTGGAACAAGTTCAGGGAGGTCGGCACTGGCCGGCAACTGACAATGGAGGAGTTTGAAATGACGGTCGGTCACTCGCCGATTGTCCAAGAGCTCATGAGGAGGCAGAATGTGGAGGAAAGCCATGGAAAGGACAATGTGGATTCAATTGGCAATGAAGGTGGCAAGGGAAACAATGGTTCCAAGTTGAAGAAGAGAGGGAACTGGTTGAGGGCCTTAAAATCCGCGATGGGGACACATAAGGAGCGGCGAAGCAGCGACGAGAGGGACACCTCTTCGGAGAAGGGGGGGAGGAGGTCAAGCTCCGCCACGGATGACAGCCAGGATAATGCCTCATTCCATGGACCTGAGAGAGTTAAGGTTAGGCAGTATGGGAAGCCATGTAAGGAGGTCACAGCTCTTTACAAGAGCCAGGAGATTCAGGCTCATAATGGATCTATATGGAGTATTAAGTTTAGCTTAGATGGGAAGTATTTAGCAAGTGCCGGCGAGGATTGTGTGATCCATGTGTGGCAGGTTGTGGAGTCTGAGAGGAAGGGGGAGCTGCTGATGGAAAAACATGAGGATGGGAATATGAACATGTTGTTTGTTGTCAATGGATCTTCGCTGGAGCCGAATCTGCTGTCCCCTCTCATGGACAAGTCACCTCTCTTGGACAATCATCATCCAGAGAGGAAGAGGAAGGGGAGGACATCCATTACCCGGAAATCGTTGAGCTTGGATCAATTAGTTATCCCGGATACCGTGTTTGCGCTCACCGAGAAACCCATTTGCTCCTTTCAGGGACATCTTCATGATGTGCTTGACCTCTCTTGGTCCAAATCTCAGCACTTGCTCTCATCTTCAATGGACAAAACGGTGCGGTTGTGGCATTTGTCTAGCAACTCTTGTTTGAAAGTTTTTTCACACAGTGACTTTGTAACTTGCATCCAGTTTAATCCTGTTGATGATAATTACTTCATTAGCGGATCCTTGGATGCTAAGGTTCGCATATGGAGCATTCCTGATAGGCAGGTTGTTGATTGGACTGATATGCATGAGATGGTTACTGCTGCTTGTTATACACCCGATGGTCAGAGTGCACTGGTTGGTTCTTACAAGGGCAGTTGCCACTTATATAACACATCAGAAAATAAGTTGCAACAAAAAAGTCAGATCAATCTGCAGAACAAGAAGAAGAAATCACATCTAAAAAAAATTACAGGTTTCCAGTTTGCCCCAGGAAGTTCATCAGAGGTACTTATCACATCTGCTGATTCACGAATTCGGGTTGTTGATGGTGTTGACCTGGTTCACAAGTTTAAAGGGTTCCGTAATTCGTCAAGCCAAATTTCAGCCTCTCTGACAGCCAACGGTAAATATATTGTCTCCGCGAGTGAGGATTCCCACGTGTACATATGGAAAAATGAAGCGGATTGTAGGCCTAACAGAAGCAAAGGTGTAACTATCACAGGTGCATACGAACATTTCCACTGTAAAGATGTTTCAGTGGCCATTCCATGGCCAGGTATGGGCGATGCCTGGGACATGCACGATACACTTTCTGGAGAGCAAACTGAGATTGATAACAATGTGGATGAGGCCTTGTCCGCCAATCATCCTCCAACCCCCGTTGAGGAAAACTTTGGCTCCGAGGGTTCACGATCCACATCGGTTTACAGCAATAGTCCGCGCCAGGCAACCATTGCAGGTGCCACAAACAGCTACTTTTTCGATAGAATTTCTGCAACATGGCCGGAGGAAAAACTTGTCGTGGCAGCTACAAAGAATCGAAGCCCTCGTATCAGTGGGGATTACTCAAACACAGGAAGTCAAAACATGTCAGCCTGGGGTATGGTGATTGTAACTGCTGGCCTTCGAGGTGAAATTAGAACTTTCCAAAATTTTGGATTGCCACTTCGGATATAA 2640 0.4947 MLYLHHLRHRTRTAATPPPQARRRNLQLCPRTQQQLRPLDLSSFLRLRAPFLPPPPPRSRRSLAPRDNGDSSRSPSSDQLTGLRQGSAGGMPRSSSDGAADPQNSVGDGVDDDDEKPCGSCSLSRSSCRCCRSCSSSSSILSIRSAVPEAGKYVNSRNRRGGSVGGGGGNGGSPWKPPSGRNGKSVDFGQNGSMVPENVAGEVVAVAAEAVASGDYNEVNEEACTIRDLDNGKEFVVKEFREDGMWNKFREVGTGRQLTMEEFEMTVGHSPIVQELMRRQNVEESHGKDNVDSIGNEGGKGNNGSKLKKRGNWLRALKSAMGTHKERRSSDERDTSSEKGGRRSSSATDDSQDNASFHGPERVKVRQYGKPCKEVTALYKSQEIQAHNGSIWSIKFSLDGKYLASAGEDCVIHVWQVVESERKGELLMEKHEDGNMNMLFVVNGSSLEPNLLSPLMDKSPLLDNHHPERKRKGRTSITRKSLSLDQLVIPDTVFALTEKPICSFQGHLHDVLDLSWSKSQHLLSSSMDKTVRLWHLSSNSCLKVFSHSDFVTCIQFNPVDDNYFISGSLDAKVRIWSIPDRQVVDWTDMHEMVTAACYTPDGQSALVGSYKGSCHLYNTSENKLQQKSQINLQNKKKKSHLKKITGFQFAPGSSSEVLITSADSRIRVVDGVDLVHKFKGFRNSSSQISASLTANGKYIVSASEDSHVYIWKNEADCRPNRSKGVTITGAYEHFHCKDVSVAIPWPGMGDAWDMHDTLSGEQTEIDNNVDEALSANHPPTPVEENFGSEGSRSTSVYSNSPRQATIAGATNSYFFDRISATWPEEKLVVAATKNRSPRISGDYSNTGSQNMSAWGMVIVTAGLRGEIRTFQNFGLPLRI* 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g1292 879 Gene3D - 323 447 IPR015943 GO:0005515
Ahy18g1292 879 ProSiteProfiles Trp-Asp (WD) repeats profile. 544 578 IPR001680 GO:0005515
Ahy18g1292 879 ProSiteProfiles Trp-Asp (WD) repeats profile. 384 425 IPR001680 GO:0005515
Ahy18g1292 879 MobiDBLite consensus disorder prediction 779 799 - -
Ahy18g1292 879 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 384 417 - -
Ahy18g1292 879 MobiDBLite consensus disorder prediction 458 477 - -
Ahy18g1292 879 MobiDBLite consensus disorder prediction 68 102 - -
Ahy18g1292 879 MobiDBLite consensus disorder prediction 281 365 - -
Ahy18g1292 879 Pfam WD domain, G-beta repeat 499 534 IPR001680 GO:0005515
Ahy18g1292 879 Pfam WD domain, G-beta repeat 383 415 IPR001680 GO:0005515
Ahy18g1292 879 Pfam WD domain, G-beta repeat 674 712 IPR001680 GO:0005515
Ahy18g1292 879 Pfam WD domain, G-beta repeat 540 577 IPR001680 GO:0005515
Ahy18g1292 879 Gene3D - 482 731 IPR015943 GO:0005515
Ahy18g1292 879 SUPERFAMILY WD40 repeat-like 379 714 IPR036322 GO:0005515
Ahy18g1292 879 MobiDBLite consensus disorder prediction 1 132 - -
Ahy18g1292 879 SMART WD40_4 671 712 IPR001680 GO:0005515
Ahy18g1292 879 SMART WD40_4 538 577 IPR001680 GO:0005515
Ahy18g1292 879 SMART WD40_4 579 618 IPR001680 GO:0005515
Ahy18g1292 879 SMART WD40_4 497 535 IPR001680 GO:0005515
Ahy18g1292 879 SMART WD40_4 377 416 IPR001680 GO:0005515
Ahy18g1292 879 SMART WD40_4 625 670 IPR001680 GO:0005515
Ahy18g1292 879 MobiDBLite consensus disorder prediction 153 186 - -
Ahy18g1292 879 PRINTS G protein beta WD-40 repeat signature 403 417 IPR020472 -
Ahy18g1292 879 PRINTS G protein beta WD-40 repeat signature 522 536 IPR020472 -
Ahy18g1292 879 PRINTS G protein beta WD-40 repeat signature 564 578 IPR020472 -
Ahy18g1292 879 ProSiteProfiles Trp-Asp (WD) repeats profile. 504 544 IPR001680 GO:0005515
Ahy18g1292 879 PANTHER WD REPEAT DOMAIN 44 120 879 IPR040324 -
Ahy18g1292 879 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 504 538 - -
Ahy18g1292 879 MobiDBLite consensus disorder prediction 26 40 - -
Ahy18g1292 879 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 544 578 - -
Ahy18g1292 879 MobiDBLite consensus disorder prediction 320 346 - -
Ahy18g1292 879 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 120 879 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g1292 Ahy-Chr18 23299895 23306019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g1292 501 670 Miscellaneous Gene Families AT5G08390 25.143 1.23e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g1292 K20241 - gmx:100815065 1023.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g1292 18 23299895 23306019 Ahy18g1292 18 23299895 23306019 ECH
Ahy18g1292 18 23299895 23306019 Ahy8g1947 8 39102549 39108634 hybridization