Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0820 ATGGCAGCTCTCACTTCTTTGTCCTTCTCATCATCATTCACTCAGTGCTGTGAGAGAAAAGCAACTGTGTCTTCATCAACTCATCGTTTCTTTGTCTCTTCAAGTTCTGAAGTCTTCGGTTTTAGGACCATTTTGTCGTACCATTATGGGGGTGTTCGAGCTTCTAGTTCCTCATCCAAAATGGTTGTCCAATGCATGTCTTCTGCCACAGATGCTCCTACTGTTTCTGAGACAAAGTTAAATTTCCTTAAGGCATATAAGCGACCAATCCCAAGTATCTACAACACTGTTCTGCAGGAGCTCATTGTGCAGCAACATTTGATGAGATATAAGAGATCGTATCGCTATGACCCTGTGTTTGCTCTTGGTTTTGTCACTGTTTATGATCAACTCATGGAAGGGTATCCTAGTGATGAGGACCGAGATGCTATCTTCAAAGCATATATTAATGCTTTGAATGAAGATCCTGAACAATACAGAAAAGATGCTCAAAAGTTGGAAGAGTGGGCGAGGGCTCAAAACCTAACTTCCCTTGTTGAGTTTTCATCCAAAGATGGAGAAATTGAGGGGATCTTGAAGGACATAGCAGAAAGAGCAGGAAAGGGGGATTTCAGCTACAGTCGTTTCTTCGCAGTAGGACTATTTCGTCTTCTTGAGTTAACAAACGCAACAGAGCCAACAATTTTGGAAAAGCTCTGCGCAGCTTTAAACATCAACAAAAAAAGTGTTGATCGGGACTTGGATGTGTATCGGAATCTGCTTTCCAAGTTGGTTCAAGCAAAGGAGCTGCTAAAGGAATACGTTGACAGGGAGAAGAAGAAAAGAGAAGAAAGAGCTGAACCCCAAAAGGCTAATGAGACCATTACAAAGTGTTTGGGACAACAACTGTCTGGTCAGCAGCTATGGTCTTATGAAAATAACATCTACTGA 930 0.4183 MAALTSLSFSSSFTQCCERKATVSSSTHRFFVSSSSEVFGFRTILSYHYGGVRASSSSSKMVVQCMSSATDAPTVSETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRSYRYDPVFALGFVTVYDQLMEGYPSDEDRDAIFKAYINALNEDPEQYRKDAQKLEEWARAQNLTSLVEFSSKDGEIEGILKDIAERAGKGDFSYSRFFAVGLFRLLELTNATEPTILEKLCAALNINKKSVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKREERAEPQKANETITKCLGQQLSGQQLWSYENNIY* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0820 309 TIGRFAM PS_II_psb29: photosystem II biogenesis protein Psp29 71 275 IPR017499 GO:0010207|GO:0015979
Ahy18g0820 309 Coils Coil 250 280 - -
Ahy18g0820 309 PANTHER PHOTOSYSTEM II BIOGENESIS PROTEIN 1 289 - -
Ahy18g0820 309 Hamap Protein Thf1 [thf1]. 69 276 IPR017499 GO:0010207|GO:0015979
Ahy18g0820 309 Pfam Thylakoid formation protein 74 278 IPR017499 GO:0010207|GO:0015979
Ahy18g0820 309 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 1 289 IPR017499 GO:0010207|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0820 Ahy-Chr18 9544818 9547572 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0820 - - gmx:100814341 457.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0820 18 9544818 9547572 Ahy18g0820 18 9544818 9547572 ECH
Ahy18g0820 18 9544818 9547572 Ahy8g1588 8 32871612 32874371 hybridization
Ahy18g0820 18 9544818 9547572 Ahy13g1494 13 20677643 20681922 PCT
Ahy13g1494 13 20677643 20681922 Ahy18g0820 18 9544818 9547572 PCT