Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1494 ATGGCCGCTGTTACTTCTTCTTTCTCTCTCTCTACTCTTTCACAGTGCTCGCAGAGGAAGAACCTTTCCCTCTCTTCGTCTACTCGTTTTTTGGGAACCAATTCCGATTCTTTCCGATTGGGACCGAATTTCTCGCTACTATATGTTGCCGTTCGAGCTTCCGATTCCGCTTCCAGAGTGATTGTTCGGTGTTCCTCTTCCCTCTCAGATATTCCAACTGTTTCGGAGACAAAGTTAGGTTTCCTTAAAGCCTATAAACGACCAATCCCTAGTATCTACAACAGTGTGTTGCAGGAGCTGATTGTCCAGCATCATTTGATGAGATACAAGAGATCATACCAGTATGACCCTGTATTTGCTCTTGGCTTTGTCACTGTATATGATCAACTCATGGAAGGGTATCCTAGTGATGAGGATCGGGATGCTATCTTCCAGGCATACATTAATGCATTGAAGGAAGATCCAGAACGATACAGAGCAGATGCACAGAAGTTGGAAGAATGGGCACGGGCTCAAAACTCAACCTCCCTGATTGAGTTTTCATCCAGAGAAGGAGAAGTTGAGGGAATACTAAAGGATATTGCAGAAAGAGCTGGAGCAAAGGGGAATTTTAGCTATAGTCGCTTCTTTGCAATTGGCCTCTTTCGCCTTCTTGAATTGGCAAATGCAATGGAACCAACAATTTTGGAAAAGCTTTGTGCAGCTTTAAATGTTAACAAAAGAAGTGTTGATCGGGACTTGGATGTGTATCGTAATCTACTTTCCAAGTTGGTTCAAGCTAAAGAGCTGCTAAGGGAATATGTTGACAGGGAGAAGAAGAAGAGAGAAGAAAGGTCTGAACCACAAAAGGCAAATGAGGCCATCACAAAATGTTTGGGACAACAGCAAATTTCTGCCCTGAAGTGA 906 0.4327 MAAVTSSFSLSTLSQCSQRKNLSLSSSTRFLGTNSDSFRLGPNFSLLYVAVRASDSASRVIVRCSSSLSDIPTVSETKLGFLKAYKRPIPSIYNSVLQELIVQHHLMRYKRSYQYDPVFALGFVTVYDQLMEGYPSDEDRDAIFQAYINALKEDPERYRADAQKLEEWARAQNSTSLIEFSSREGEVEGILKDIAERAGAKGNFSYSRFFAIGLFRLLELANAMEPTILEKLCAALNVNKRSVDRDLDVYRNLLSKLVQAKELLREYVDREKKKREERSEPQKANEAITKCLGQQQISALK* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1494 301 Hamap Protein Thf1 [thf1]. 68 276 IPR017499 GO:0010207|GO:0015979
Ahy13g1494 301 TIGRFAM PS_II_psb29: photosystem II biogenesis protein Psp29 70 275 IPR017499 GO:0010207|GO:0015979
Ahy13g1494 301 Coils Coil 250 280 - -
Ahy13g1494 301 Pfam Thylakoid formation protein 73 278 IPR017499 GO:0010207|GO:0015979
Ahy13g1494 301 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 1 289 IPR017499 GO:0010207|GO:0015979
Ahy13g1494 301 PANTHER PHOTOSYSTEM II BIOGENESIS PROTEIN 1 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1494 Ahy-Chr13 20677643 20681922 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g1494 - - aip:107632658 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g1494 13 20677643 20681922 Ahy13g1494 13 20677643 20681922 ECH
Ahy18g0820 18 9544818 9547572 Ahy13g1494 13 20677643 20681922 PCT
Ahy8g1588 8 32871612 32874371 Ahy13g1494 13 20677643 20681922 PCT
Ahy13g1494 13 20677643 20681922 Ahy18g0820 18 9544818 9547572 PCT
Ahy13g1494 13 20677643 20681922 Ahy8g1588 8 32871612 32874371 PCT