Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0562 ATGGCTTCCTCGAGAGTGGATCTAGATGGGAACCCAATAAAGCCCATAACGATTTGCATGATCGGTGCCGGAGGTTTCATAGGCTCCCACCTCTGCGAGAAGCTCATGACGGAGACGCCGCACACGGTGCTCGCTTTGGACGTTTACAACGACAAGATCAAGCACCTCTTGGAGCCTGAAACGAATCCATGGCATGGTAGAATCAACTTCCACCGCCTCAACATCAAGCACGATTCGAGGCTCGAAGGTCTTATCAAAATGGCAGATCTGACGATTAATTTGGCTGCTATATGCACTCCTGCGGATTACAACACGCGCCCTTTGGACACCATTTATAGCAACTTCATCGATGCACTTCCAGTGGTGAAGTACTGTTCTGAAAACAACAAGCGTCTCATTCATTTCTCGACTTGTGAAGTGTATGGGAAAACCATTGGGAGCTTTCTCCCTAAGGATAGCCCGCTTCGTAAGGATCCTGCATACTATGTACTTAAAGAAGATGAGTCTCCATGCATTTTTGGTTCCATTGAAAAGCAGAGATGGTCTTATGCCTGTGCAAAGCAGTTGATTGAGAGGCTGATTTATGCTGAGGGTGCTGAAAATGGTTTGGAGTTCACAATTGTGCGACCCTTTAATTGGATTGGACCACGAATGGATTTCATTCCCGGCATTGATGGTCCAAGTGAAGGTGTTCCTCGTGTTCTGGCATGCTTTAGCAATAATCTCCTGAGGAAAGAGCCCCTAAAGCTTGTGGATGGTGGTCAATCCCAGAGGACTTTTGTTTATATTAAGGATGCTATTGAAGCTGTCTTGTTGATGATTGAAAATCCTGCTAGGGCTAATGGACACATCTTTAATGTTGGTAACCCAAACAATGAGGTTACAGTTAGGCAGCTTGGGGAAATGATGGTTAAGGTTTACTCTAAGGTAAGTGGAGATCCACCTTTGGAAAATGCTACAGTTGATGTGAGCTCTAAAGAATTTTATGGTGAGGGATACGATGATAGCGACAAGCGAATTCCAGACATGACCATCATTAACAGACAGCTTGGATGGAACCCAAAAACCTCACTTTGGGACTTGCTTGAATCCACACTGACCTATCAGCACAGGACCTATGCTGAAGCCATTAAGAAAGTCATTGCTAAACCTGTTGCAAGTTAA 1164 0.4502 MASSRVDLDGNPIKPITICMIGAGGFIGSHLCEKLMTETPHTVLALDVYNDKIKHLLEPETNPWHGRINFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRKDPAYYVLKEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRKEPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLGEMMVKVYSKVSGDPPLENATVDVSSKEFYGEGYDDSDKRIPDMTIINRQLGWNPKTSLWDLLESTLTYQHRTYAEAIKKVIAKPVAS* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0562 387 PANTHER - 4 386 - -
Ahy18g0562 387 PANTHER BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA 4 386 - -
Ahy18g0562 387 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 17 370 IPR036291 -
Ahy18g0562 387 CDD Arna_like_SDR_e 17 372 IPR045869 GO:0016831
Ahy18g0562 387 Gene3D - 16 378 - -
Ahy18g0562 387 Pfam NAD dependent epimerase/dehydratase family 18 288 IPR001509 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0562 Ahy-Chr18 5487942 5491221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0562 16 382 Miscellaneous Gene Families AT1G02000 21.608 2.02e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0562 K12449 - gmx:100792879 757.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0562 18 5487942 5491221 Ahy18g0562 18 5487942 5491221 ECH
Ahy18g0562 18 5487942 5491221 Ahy8g1365 8 29806372 29809593 hybridization
Ahy18g0562 18 5487942 5491221 Ahy13g0256 13 2624850 2628002 PCT
Ahy13g0256 13 2624850 2628002 Ahy18g0562 18 5487942 5491221 PCT