Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0556 ATGGCGGCTGGTTTTGTGGCGTGGGTGGTGGTGTTCTTGTTAGGGGCGGCCACGGCGGCGGTTGGTGGATCTCCGGCGACGCTGAGCTTGGAGAGGGCGTTTCCGACGAATCATGGAGTGGAGCTGAGTCAGCTGAGAGCACGTGACATGCTGAGGCACAGAAGAATGCTTCAGTCCACTAATAATGGGGTCATTGATTTCCAAGTTCAAGGCACCTTCGATCCCTTCCAAGTCGGGTTGTACTATACAAAAGTGCAGTTGGGTTCTCCTCCAGTTGATTTCTATGTGCAGATTGACACTGGCAGTGATGTTCTCTGGGTTAGCTGCACCTCTTGCAGTGGTTGTCCCCAAACAAGTGGCCTTCAGATTCCACTCAATTTCTTCGATGCATCGCGTTCATCGACGTCTTCGATGATCTCTTGCTCAGACCAGAGGTGCAACACTGGAGTTCAATCATCAGATGCAACCTGTTCCAGTCAGGGTAACCAGTGCTCCTATAGTTTCCAGTATGGAGATGGTAGTGGTACATCGGGCTATTATGTTTCGGATTTGATGCATTTCAACACTATTTTTGAGGGATCTGTATCTTCAAATTCCACGGCATCTGTTGTTTTTGGATGTAGCACAGAGCAGAGCGGGGACTTGACAAAGTCCGATAGAGCTGTCGCTGGCATATTTGGATTCGGACAACAAGGTTTGTCTGTTATCTCCCAACTTTCCTCGCAAGGAGTAGCTCCAAATGTGTTCTCTCACTGTCTGAAAGGAGATAGCAGTGGTGGCGGCATATTGGTTCTTGGTGAGATTGTGGAGCCAAACATTGTTTATACTTCACTTGTAGCATCACAGCCACATTACAATTTGAATCTGCAGAGTATCTCTGTCAACGGCCAGAAGTTACAAATTGATTCATCAGTTTTTGCAACATCAAGCAACAAAGGTACCATTGTTGATTCTGGAACAACTTTGGCATATCTTGCCGAGGAAGCTTATGATCCCTTTGTCAATGCGATTACGTCTTCAATTCCACAATCCGTAAGCAGTGTTAATTCCAAGGGAAACCAGTGTTACTTAGTCACTGGCAGTGTGTCTGATATTTTTCCTCAAGTGAGTCTGAACTTTGCGGGAGGTGCATCCATGGATTTAAAACCACAAGACTATCTTATACAGCAGAGTTCTAGTGGTGGTGCAGCAGTATGGTGTATTGGCTTTCAGAAAATCTCTGGTCAAGATGTTACAATTCTAGGAGACCTTGTATTGAAAGACAAAATCGTTGTTTATGATCTTGCTGGTCAACGCCTTGGATGGGCTCCCTATAACTGTGGTTCGTCAGTTAATGTGTCTGCAAATACTGGCACTGGAAGAAGTGAATATGTGAATGCTGGAGAACTAAGTGGCAGCACTTCTTCACATGAAGGACTTAACAAGCTGATAAACATAGGGGTCTTAGCTTTAACACTGATTTGCTACATAGTGATCTTATAG 1482 0.4541 MAAGFVAWVVVFLLGAATAAVGGSPATLSLERAFPTNHGVELSQLRARDMLRHRRMLQSTNNGVIDFQVQGTFDPFQVGLYYTKVQLGSPPVDFYVQIDTGSDVLWVSCTSCSGCPQTSGLQIPLNFFDASRSSTSSMISCSDQRCNTGVQSSDATCSSQGNQCSYSFQYGDGSGTSGYYVSDLMHFNTIFEGSVSSNSTASVVFGCSTEQSGDLTKSDRAVAGIFGFGQQGLSVISQLSSQGVAPNVFSHCLKGDSSGGGILVLGEIVEPNIVYTSLVASQPHYNLNLQSISVNGQKLQIDSSVFATSSNKGTIVDSGTTLAYLAEEAYDPFVNAITSSIPQSVSSVNSKGNQCYLVTGSVSDIFPQVSLNFAGGASMDLKPQDYLIQQSSSGGAAVWCIGFQKISGQDVTILGDLVLKDKIVVYDLAGQRLGWAPYNCGSSVNVSANTGTGRSEYVNAGELSGSTSSHEGLNKLINIGVLALTLICYIVIL* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0556 493 Pfam Xylanase inhibitor C-terminal 284 436 IPR032799 -
Ahy18g0556 493 SUPERFAMILY Acid proteases 76 444 IPR021109 -
Ahy18g0556 493 Gene3D Acid Proteases 268 447 IPR021109 -
Ahy18g0556 493 ProSiteProfiles Peptidase family A1 domain profile. 81 436 IPR033121 -
Ahy18g0556 493 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 9 457 - -
Ahy18g0556 493 CDD pepsin_A_like_plant 81 440 IPR034161 -
Ahy18g0556 493 Gene3D Acid Proteases 57 267 IPR021109 -
Ahy18g0556 493 PRINTS Pepsin (A1) aspartic protease family signature 314 325 IPR001461 GO:0004190|GO:0006508
Ahy18g0556 493 PRINTS Pepsin (A1) aspartic protease family signature 412 427 IPR001461 GO:0004190|GO:0006508
Ahy18g0556 493 PRINTS Pepsin (A1) aspartic protease family signature 87 107 IPR001461 GO:0004190|GO:0006508
Ahy18g0556 493 Pfam Xylanase inhibitor N-terminal 81 266 IPR032861 -
Ahy18g0556 493 PANTHER ASPARTYL PROTEASES 9 457 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0556 Ahy-Chr18 5424838 5428923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0556 54 440 Miscellaneous Gene Families AT1G44130 27.612 7.20e-41 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0556 - K00924 gmx:100791299 780.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0556 18 5424838 5428923 Ahy18g0556 18 5424838 5428923 ECH
Ahy18g0556 18 5424838 5428923 Ahy8g1360 8 29732690 29736814 hybridization
Ahy18g0556 18 5424838 5428923 Ahy13g0260 13 2670702 2674792 PCT
Ahy13g0260 13 2670702 2674792 Ahy18g0556 18 5424838 5428923 PCT