Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0260 ATGCCTGCCGCACTTCTCTTCTCCGCCGTACTGCTGCTTCTTCTAGCTCCGGCGGTGTGGCCTTCTCCGGTGACTCTCCCGCTCGAGCGAGCTTTTCCGACCAACCATGGAGTGGAGTTGAGCCAGCTCAAAGCATGGGACTCTGTCAGACATCGAAGGCTGTTGCAGCAAACAACAACTACCTATGTTGTCGATTTCCCTGTTAGGGGCACCTTCGATCCATCCCAAGTCGGGCTTTACTATACAAAGGTGAGGTTGGGTTCTCCTCCAAGGGAGTTTCATGTGCAGATTGACACTGGCAGTGATGTTCTTTGGGTTAGTTGTGGTTCCTGCAATGGTTGCCCTGAGACAAGTGGCCTTCAAATTCAGCTCAATTATTTCGACCCGGGGAGTTCATCAACATCCTCATTGATCTCTTGTTTGGACCAAAGGTGTAGGAGTGGAGAGGAGTCCTCGGATACAAGCTGTTCTACTCAGAGCAACCAATGCACTTACACATTCCAGTATGGAGATGGTAGTGGGACTTCAGGCTATTATGTATCAGACTTGATGCATTTTGCAAGTATTTTTGAGGGATCCGTGACAGCAAATTCTTCAACGCCTATAGTTTTCGGTTGTAGCAATCTACAGACCGGGGAGTTGACTAAGTCTGATAGAGCGATCGATGGAATATTTGGATTTGGGCAGCAGGAAATGTCTGTCATCTCCCAGCTCTCCTCGCAAGGAATAGCCCCCAGAGTGTTCTCGCATTGCCTGAAGGGTGATAATAGTGGTGGGGGGATATTGGTACTCGGAGATATTGTGGAACCAAACATAATTTATAGTCCACTTGTTCCATCACAGCCTCATTACAATTTAAATCTGCAGAGCATCTCTGTCAATGGTCAACCATTGCCAATTGATCCTACAGTTTTTGCTACATCAAGCAACAGAGGTACCATTATAGATTCTGGAACAACTTTGGCATACCTTGCCGAAGAGGCTTACAACCCATTTGTCAATGCGATTGTAGCTGCAGTTCCACCATCTGTACGCACTGTTCTTTCCAAGGGAAGTCCGTGCTTCTTAATATCCAGCAGTGTTTCCGACACATTTCCTCAAGTAAGTCTGAATTTTGCCGGTGGTGCATCTTTGGTTCTAAGACCACAGGACTACCTCATACAACAGAATCCTATTGTTGATGGAGCAGTGTGGTGTATTGGCTTTCAAAAAATCCCAGGTGAAGGCATAACAATTCTAGGAGACCTTGTATTAAAAGATAAAATTTTTATCTATGATCTTGCTCATCAGCGCATTGGGTGGACTAACTATGACTGTTCATTGTCCGTTAACGTCACTGCATCAACGGGGGGAGGAAGAAGTGAATTTGTGAATGCAGGAGAGCTAAGTGGAAGCACTTCTTTACAAGATGGACCTCACAAGTTGATACACATTGGAGTCATGGCTTTCTTCTTATACCTTCTAGTTTTGTAG 1473 0.4576 MPAALLFSAVLLLLLAPAVWPSPVTLPLERAFPTNHGVELSQLKAWDSVRHRRLLQQTTTTYVVDFPVRGTFDPSQVGLYYTKVRLGSPPREFHVQIDTGSDVLWVSCGSCNGCPETSGLQIQLNYFDPGSSSTSSLISCLDQRCRSGEESSDTSCSTQSNQCTYTFQYGDGSGTSGYYVSDLMHFASIFEGSVTANSSTPIVFGCSNLQTGELTKSDRAIDGIFGFGQQEMSVISQLSSQGIAPRVFSHCLKGDNSGGGILVLGDIVEPNIIYSPLVPSQPHYNLNLQSISVNGQPLPIDPTVFATSSNRGTIIDSGTTLAYLAEEAYNPFVNAIVAAVPPSVRTVLSKGSPCFLISSSVSDTFPQVSLNFAGGASLVLRPQDYLIQQNPIVDGAVWCIGFQKIPGEGITILGDLVLKDKIFIYDLAHQRIGWTNYDCSLSVNVTASTGGGRSEFVNAGELSGSTSLQDGPHKLIHIGVMAFFLYLLVL* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0260 490 Pfam Xylanase inhibitor C-terminal 283 435 IPR032799 -
Ahy13g0260 490 Pfam Xylanase inhibitor N-terminal 80 266 IPR032861 -
Ahy13g0260 490 Gene3D Acid Proteases 55 266 IPR021109 -
Ahy13g0260 490 Gene3D Acid Proteases 267 447 IPR021109 -
Ahy13g0260 490 PANTHER ASPARTYL PROTEASES 5 456 IPR001461 GO:0004190|GO:0006508
Ahy13g0260 490 SUPERFAMILY Acid proteases 77 442 IPR021109 -
Ahy13g0260 490 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 5 456 - -
Ahy13g0260 490 CDD pepsin_A_like_plant 80 439 IPR034161 -
Ahy13g0260 490 PRINTS Pepsin (A1) aspartic protease family signature 411 426 IPR001461 GO:0004190|GO:0006508
Ahy13g0260 490 PRINTS Pepsin (A1) aspartic protease family signature 86 106 IPR001461 GO:0004190|GO:0006508
Ahy13g0260 490 PRINTS Pepsin (A1) aspartic protease family signature 313 324 IPR001461 GO:0004190|GO:0006508
Ahy13g0260 490 ProSiteProfiles Peptidase family A1 domain profile. 80 435 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0260 Ahy-Chr13 2670702 2674792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0260 64 440 Miscellaneous Gene Families AT1G44130 27.848 1.02e-38 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0260 - K00924 gmx:100811632 755.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0556 18 5424838 5428923 Ahy13g0260 13 2670702 2674792 PCT
Ahy8g1360 8 29732690 29736814 Ahy13g0260 13 2670702 2674792 PCT
Ahy13g0260 13 2670702 2674792 Ahy18g0556 18 5424838 5428923 PCT
Ahy13g0260 13 2670702 2674792 Ahy8g1360 8 29732690 29736814 PCT