LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy18g0490	ATGTACAAGAACCAGCTGCAGGAGCTGGCGCAGCGGAGTTGCTTCAACCTGCCGTCGTACACGTGCATTCGGGAAGGTCCCGATCACGCTCCGAGGTTCAAGGCGACGGTGAACTTTAACGGCGAGACCTTCGAGAGCCCTCACTACTGCTCAACGCTACGCCAGGCTGAGCACTCCGCCGCCGAGGTCGCACTCAACTCCCTCTCTCACCGTGGCCCCTCTCACTCCCTCGCCGCTAAGATCCTCGATGAAACTGGAGTATACAAGAACCTCTTACAGGAAATTGCACAAAGGGTAGGGGCACCATTGCCTCTGTACACAACATACAGGTCAGGCTTAGGACATCTACCTGTTTTTACTGGGATGGTAGAATTGGCTGGAATTACATTCACTGGTGAACCAGCCAAGAATAAGAAACAAGCTGAGAAAAATGCAGCAATGGCGGCTTGGTCATCTCTTAAACAATTGGCAAAAGAAACTGCAAGCTCTTCGAATGAACCAGAGATCAATGATGAACTTGAACAGATCACAATAGCACGGGCTTTACTGAACTACCGCCAGAAGGAAAAAATGGCAGTGTCAAATCCAAATGCTTTAATGCCGTTCCAAAAGAAATTTCATATTCAACATCCCAGGGCATCCAGTCCACAACCTCTACCTGCAACTACATCAAAGATCCTTCCCCTAATTTGCCTAAAGACAGCACCTCGAAATAAGCCCTCATTGGCAACCGCAAATGAAGGACCTCGAAGCAGGCATCCTTTAACAGCTAGTGACAGTTCCCTGTTACCACCACAATCTTCTGCACTAGAAAGCCGAGTTGCCCGTCCCATAAAGTTCCCTGCAGCAGGAGCAGCACCATATGTTCCCCTTCGACATATGAGATCATCATGCCATGGAATTGCTCCTGCAGTGAATATACGGTCAGTAGTACCTGTCTATGCTGCACCACCTCTTCCACCACCCGGCACAGTGCCCCAGCAGGTTATAAGGGCTTCTACTGTACAACTTGCTCCTCCGGTCACTATTAGGCAAGCTATTCCAGTATATGCTGCTCCACCAATAAGTAAAGATGAACCTGCTCCTGTTCAGAAGCAAAACCCCCTTACCCCGGTTAAAGAAGAAAAACTGCCACCTAAAATTAAAGAGACGGATGCCAAGTTTGAGAACGCATTAGCAGAATCACGGACAGCACAAATCTTGGAGCAGCTGAAAATTTGA	1221	0.4873	MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGETFESPHYCSTLRQAEHSAAEVALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPLYTTYRSGLGHLPVFTGMVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETASSSNEPEINDELEQITIARALLNYRQKEKMAVSNPNALMPFQKKFHIQHPRASSPQPLPATTSKILPLICLKTAPRNKPSLATANEGPRSRHPLTASDSSLLPPQSSALESRVARPIKFPAAGAAPYVPLRHMRSSCHGIAPAVNIRSVVPVYAAPPLPPPGTVPQQVIRASTVQLAPPVTIRQAIPVYAAPPISKDEPAPVQKQNPLTPVKEEKLPPKIKETDAKFENALAESRTAQILEQLKI*	407

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy18g0490	406	Gene3D	-	2	83	-	-
	Ahy18g0490	406	ProSiteProfiles	Double stranded RNA-binding domain (dsRBD) profile.	87	155	IPR014720	-
	Ahy18g0490	406	ProSiteProfiles	Double stranded RNA-binding domain (dsRBD) profile.	1	70	IPR014720	-
	Ahy18g0490	406	MobiDBLite	consensus disorder prediction	354	380	-	-
	Ahy18g0490	406	Pfam	Double-stranded RNA binding motif	88	153	IPR014720	-
	Ahy18g0490	406	Pfam	Double-stranded RNA binding motif	2	68	IPR014720	-
	Ahy18g0490	406	SUPERFAMILY	dsRNA-binding domain-like	88	158	-	-
	Ahy18g0490	406	SUPERFAMILY	dsRNA-binding domain-like	2	68	-	-
	Ahy18g0490	406	CDD	DSRM_AtDRB-like_rpt2	86	154	IPR044451	GO:0003725
	Ahy18g0490	406	Gene3D	-	84	155	-	-
	Ahy18g0490	406	CDD	DSRM_AtDRB-like_rpt1	1	69	IPR044450	GO:0003725
	Ahy18g0490	406	PANTHER	DOUBLE-STRANDED RNA-BINDING PROTEIN 2	1	389	-	-
	Ahy18g0490	406	MobiDBLite	consensus disorder prediction	240	268	-	-
	Ahy18g0490	406	PANTHER	-	1	389	-	-
	Ahy18g0490	406	SMART	DRBM_3	2	69	IPR014720	-
	Ahy18g0490	406	SMART	DRBM_3	88	154	IPR014720	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy18g0490	Ahy-Chr18	4419570	4423591	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy18g0490	-		-	gmx:100815739	593.578

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy18g0490	18	4419570	4423591	Ahy18g0490	18	4419570	4423591	ECH
	Ahy18g0490	18	4419570	4423591	Ahy8g1297	8	28629769	28633824	hybridization
	Ahy18g0490	18	4419570	4423591	Ahy13g0337	13	3456128	3459281	PCT
	Ahy13g0337	13	3456128	3459281	Ahy18g0490	18	4419570	4423591	PCT