Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0337 ATGTACAAGAACCAGCTTCAGGAGCTGGCACAGCGAAGCTGCTTCAACCTCCCTTCGTACACGTGCATAAGGGAGGGTCCGGATCACGCGCCGCGCTTCAAAGCCACCGTTAACTTCAACGGCGAAGTCTTCGAGAGCCCACACTACTGCTCAACTCTCCGCCAGGCCGAGCACTCCGCCGCCGAGGTCGCTCTCAACTCCCTCTCCCACCGTGGACCCTCTCACTCCCTCGCCGCCAGGATCCTCGATGAAACTGGAGTATACAAGAATCTCTTACAGGAGATCGCGCAAAGGGTAGGCGCTCCATTGCCACAGTACACAACATACAGGTCGGGACTCGGACATCTACCTGTTTTCACCGGGACAGTTGAGTTGGCTGATATCACATTTACCGGCGAACCTGCCAAGAACAAGAAGCAAGCGGAGAAAAATGCAGCAATGGCAGCCTGGTCGTCTCTAAAACAATTGGCAAAAGAAACTGCAAGCTCTTCAACCGAACCGGAGAATAACGACGAGCTAGAACAGATCACGATTGCTCGGGCCTTATTAAACTATCGTCAAAAAGAGAAGATGGCTATGTCACACCCGGATGCTTCAATTCCATTTCCAAAGAAGTTTCAAATTCAAAGTCCCAGGCCAACTAGTCCTCAATCACGACCTGCCGCGGCATCTAAGATACTTCCCTTGATTTTCCCAAGGACATCCTCTCGAAGCAGGCCTTCCTTTGCAACACCAAACGAAAGCTCTCGAAGCAGGCCTGCAGTAGTGACAGCAGCTTCCGGTGAGAGTTCCATGATCTCACCACCATCTTCTATGTTAGAAAGCCGAGTGAACCGTCGACCAAGGTTCCCTGCAGCAGGAGCAGCACCTTATGTTCCCATCGGACAGATGAGATTACCTTGCCGAGGCGTTGCCCCTCCGGTGACCATAAGGACCGCAGTACCTGTATTCTCTGCACCACCCCTTCCACCACCCGGTGCACTCTCTCATCAACCAATGCGAGCTCCTCCTTTGCGAGCCGCCCCTCCAGTCACTATTCAGCAAGCTGTTCCTGTATTTTCTGCTAAAGACAAACCTGTTACTGATCCACCAGTTCAAAAAGATGAACCACTCATTGCTCTGCCAGTCCAAAAAGACGAACCAATCATTGCTCCGAAAGACGATTCGCCAAACATCACAACCACAAGCATTACTCCAGTTAGCCAAGAAACCAAACAGGAAGCGAAAGCCGAGGAGACAGATGCCGCCGTTCCACCGGAATCCGAGACAGTGGCGAGCTTGGAGCAGCTGAAGATTTGA 1299 0.5212 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFESPHYCSTLRQAEHSAAEVALNSLSHRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTYRSGLGHLPVFTGTVELADITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETASSSTEPENNDELEQITIARALLNYRQKEKMAMSHPDASIPFPKKFQIQSPRPTSPQSRPAAASKILPLIFPRTSSRSRPSFATPNESSRSRPAVVTAASGESSMISPPSSMLESRVNRRPRFPAAGAAPYVPIGQMRLPCRGVAPPVTIRTAVPVFSAPPLPPPGALSHQPMRAPPLRAAPPVTIQQAVPVFSAKDKPVTDPPVQKDEPLIALPVQKDEPIIAPKDDSPNITTTSITPVSQETKQEAKAEETDAAVPPESETVASLEQLKI* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0337 432 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 70 IPR014720 -
Ahy13g0337 432 Gene3D - 2 83 - -
Ahy13g0337 432 SUPERFAMILY dsRNA-binding domain-like 88 159 - -
Ahy13g0337 432 PANTHER - 1 431 - -
Ahy13g0337 432 SMART DRBM_3 88 154 IPR014720 -
Ahy13g0337 432 SMART DRBM_3 2 69 IPR014720 -
Ahy13g0337 432 Pfam Double-stranded RNA binding motif 2 68 IPR014720 -
Ahy13g0337 432 Pfam Double-stranded RNA binding motif 88 153 IPR014720 -
Ahy13g0337 432 MobiDBLite consensus disorder prediction 189 276 - -
Ahy13g0337 432 MobiDBLite consensus disorder prediction 234 274 - -
Ahy13g0337 432 SUPERFAMILY dsRNA-binding domain-like 2 68 - -
Ahy13g0337 432 MobiDBLite consensus disorder prediction 388 404 - -
Ahy13g0337 432 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 87 155 IPR014720 -
Ahy13g0337 432 CDD DSRM_AtDRB-like_rpt2 86 154 IPR044451 GO:0003725
Ahy13g0337 432 Gene3D - 84 155 - -
Ahy13g0337 432 CDD DSRM_AtDRB-like_rpt1 1 69 IPR044450 GO:0003725
Ahy13g0337 432 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 2 1 431 - -
Ahy13g0337 432 MobiDBLite consensus disorder prediction 376 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0337 Ahy-Chr13 3456128 3459281 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0337 - - gmx:100816445 540.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g0337 13 3456128 3459281 Ahy13g0337 13 3456128 3459281 ECH
Ahy18g0490 18 4419570 4423591 Ahy13g0337 13 3456128 3459281 PCT
Ahy8g1297 8 28629769 28633824 Ahy13g0337 13 3456128 3459281 PCT
Ahy13g0337 13 3456128 3459281 Ahy18g0490 18 4419570 4423591 PCT
Ahy13g0337 13 3456128 3459281 Ahy8g1297 8 28629769 28633824 PCT