Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0406 ATGGCAAACAATTCTTCTAATGGAGATCACCAAACATCAACAAAGCAGCCACCTCTGCCATCTCCCTTGCGTTTCTCCAAATTCTTTCAGTCCAACATGAGAATATTGGTCACTGGAGGAGCTGGATTCATCGGGTCTCACCTGGTTGACAGATTGATGGAAAATGAAAAAAATGAGGTCATTGTTGCTGATAACTACTTCACTGGATCCAAGGACAATCTCAAAAAATGGATTGGTCATCCAAGATTTGAGCTTATCCGTCATGATGTTACGGAGCCATTGTTGATTGAGGTTGATCAGATCTATCATCTTGCATGCCCAGCATCTCCTATTTTCTACAAATACAATCCTGTGAAGACAATAAAGACAAATGTGATTGGAACACTGAACATGCTTGGGCTTGCAAAGCGAGTTGGAGCAAGGATTTTACTTACATCAACTTCTGAGGTTTATGGTGATCCTCTTGTGCACCCCCAACCTGAAAGCTACTGGGGAAATGTTAACCCTATTGGAGTTCGTAGCTGCTACGATGAGGGGAAGCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGGCAGCACGGGCTAGAAATACGCATTGCAAGAATCTTTAACACGTATGGACCGCGCATGAACATTGATGATGGACGTGTTGTTAGCAACTTCATTGCTCAGGCACTTCGTGGTGAACCCTTGACAGTCCAATCTCCAGGGACACAAACTCGCAGTTTCTGCTACGTCTCAGACATGGTTGATGGCCTTATCCGTCTCATGGAAGGACCGAACACCGGACCAATCAACCTTGGAAACCCAGGTGAATTTACAATGGTTGAACTTGCTGAGACAGTGAAGGAGCTTATTAATCCAAAAGTGGAGATCAAGATGGTGGAGAACACCCCGGATGATCCACGACAGAGGAAACCGGACATAACACAGGCAAAGGAATTGTTGGGATGGGAACCGAAAATCAAGTTGCGCGATGGCCTTCCTCGCATGGAGGAGGATTTCCGTCTGAGGCTTGGAGTCGACAAGAGCAATTAA 1041 0.4524 MANNSSNGDHQTSTKQPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDRLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGLEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQSPGTQTRSFCYVSDMVDGLIRLMEGPNTGPINLGNPGEFTMVELAETVKELINPKVEIKMVENTPDDPRQRKPDITQAKELLGWEPKIKLRDGLPRMEEDFRLRLGVDKSN* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0406 346 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 1 346 IPR044516 GO:0042732|GO:0048040|GO:0070403
Ahy18g0406 346 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 28 337 IPR036291 -
Ahy18g0406 346 Pfam GDP-mannose 4,6 dehydratase 36 332 IPR016040 -
Ahy18g0406 346 MobiDBLite consensus disorder prediction 1 21 - -
Ahy18g0406 346 CDD UGD_SDR_e 33 337 - -
Ahy18g0406 346 PANTHER UDP-GLUCURONATE DECARBOXYLASE-RELATED 1 346 - -
Ahy18g0406 346 Gene3D - 32 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0406 Ahy-Chr18 3462604 3466430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0406 30 332 Miscellaneous Gene Families AT1G02000 24.179 1.55e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0406 K08678 - gmx:100790835 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0406 18 3462604 3466430 Ahy18g0406 18 3462604 3466430 ECH
Ahy18g0406 18 3462604 3466430 Ahy13g0441 13 4559605 4563533 ECH
Ahy18g0406 18 3462604 3466430 Ahy8g1210 8 27463799 27467625 hybridization
Ahy18g0406 18 3462604 3466430 Ahy13g0440 13 4554332 4557862 PCT
Ahy13g0441 13 4559605 4563533 Ahy18g0406 18 3462604 3466430 PCT