Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0280 ATGAATTTGCAACAAGCTGGGCAGCCTAAATCTTCTAATGGATATGGGCGTCGAAAATCTGAAAGAGAAGGGGCAACAAAGTCAGAGAATAAAATCCCATCTGGAAAATTAAATTCCGCCAGATTAGCAAGTACAGGTGCTGTGACTGGCTGTAAAGGTGGTGGCTATGAGAGTCCTTCACATGATCGTCTAGTATATGTAACAACATGTCTTATTGGGCACCAGGTGGAAGTTCAGGTGAAAAATGGGTCAATGTACTCTGGAATATTTCATGCAACAAACGCTGACAATGATTTTGGAATTGTTTTGAAAATGGCTCGCTTAATTAAGGATGGTTCTTTAAAAGGGCAGAAGTCTAGTGCCGAACCTGTCAGCAAGGCTCCTTCTAAGATCTTAATTATACCTGCCAAAGAACTTGTACAAGTTATAGCAAAGGGTGTTGCCGTTACTAGGGATGGCCTACCTAGTGAATTGCACCATGATATGCATCAGGAAATCATGGTAGATTCGTTAATATCTCATTCTCGACATGTTGAGTTAGGGAGAGAATTGAAACCCTGGGTACCTGATGAAGATGTTCCACAATGCCCAGAACTGGAAAATACCTTTGATGGTCCTTGGAATAGGGGATGGGATCAGTTTGAAACAAATGAGGCCTTGTTTGGTGTAAAAAGCACATTCAATGAGGAACTATATACAACAAAGCTTGAAAAGGGGCCTCGGACAAGAGAACTGGAAAAACAAGCCTTAAGAATAGCAAGAGAAATTGAGGGTGAGGAAACCCAAGATCTGCATCTTGCGGAGGAAAGAGGACTTCACTTTCATGAAAACTTTGATATTGATGAAGAAACTAGATTCTCTTCAGTCGCTAGGGGTAAAGGTGTTGATGATAGCGGATATGATGAAAATGAGGACATACTGTCTGATTCACTCAATTCTGAAACCTTTGGTGGTATACTTGGCTCAGTAGGTAAGGGACCTGGTGAAATAACTGGTGGAAAAGGGAATGATGGAGCACTAGCAAATTCGTCCTCTTTGGATCTTCCACAGTCATCTCAATCAAGCACTGGTGTGGATTTAAGCCGCTCTGGTTCTTATGATCATGCCAAGCAATTGGCATCGGAACTCCCTACTAAAATCTACTCATCTTCAGACGAGGAAAACAGGATTCAGGATCATTTGGCCAGTGATCTACATAGATCCAGTGGTAATAACAAGGAAGAAAATCAGAAACAATCTGAGGATGTTCAACTGTCAAAATCTGAAGATTTACATGCATCACTCCACTCAAAGAAAGATGGCTCTGATAAAGGGGTATTATCTTCTAATGTCACCTCTTATACCGCTTCATCTCATGTTCCATCAAAGACTCACGAAAAGACTGGCTCACCTGGGGATTTGACTCAGCGTTCACTTGCTGGAAAAATTAATGGGGAAGCAAAGTTTGTAAGTCCACGTGGGACATCATCTGCTTCAGATTCTGTGGGAGGTGTGGCAGCATCCTCTGGTCTTGGTTTGTCTCCAAGTTCATCTGTTGGTTCATTGTCTTCTGAAAAATCAACTCTTAATCCCAATGCCAAGGAATTCAAGCTCAATCCTAATGCAAAGAGTTTTGTTCCCTCTCAAACACCTGTTCGGCCTCCTACCCCCGTGTCCGATGGTTCCTTTTATTTTCCACCCAATGTATCTACTGTACCAAATATGCCAGGCATGCCCATGAGTATTGGAGTTGGACCTACTTTTACTGGGCCACAACACATGATATATAATCCGCAGGTAGCGCAAATGCCATCTCAACCATATTTTCATCCAAATGGCCCACAGTATGGTCAGCTTATTGGTCATCCTAGGCAGGTTTTATACATGCCGAGTTACCTACCTCCTGAAATGCCATACAAGGGACGAGATTATTGA 1914 0.4237 MNLQQAGQPKSSNGYGRRKSEREGATKSENKIPSGKLNSARLASTGAVTGCKGGGYESPSHDRLVYVTTCLIGHQVEVQVKNGSMYSGIFHATNADNDFGIVLKMARLIKDGSLKGQKSSAEPVSKAPSKILIIPAKELVQVIAKGVAVTRDGLPSELHHDMHQEIMVDSLISHSRHVELGRELKPWVPDEDVPQCPELENTFDGPWNRGWDQFETNEALFGVKSTFNEELYTTKLEKGPRTRELEKQALRIAREIEGEETQDLHLAEERGLHFHENFDIDEETRFSSVARGKGVDDSGYDENEDILSDSLNSETFGGILGSVGKGPGEITGGKGNDGALANSSSLDLPQSSQSSTGVDLSRSGSYDHAKQLASELPTKIYSSSDEENRIQDHLASDLHRSSGNNKEENQKQSEDVQLSKSEDLHASLHSKKDGSDKGVLSSNVTSYTASSHVPSKTHEKTGSPGDLTQRSLAGKINGEAKFVSPRGTSSASDSVGGVAASSGLGLSPSSSVGSLSSEKSTLNPNAKEFKLNPNAKSFVPSQTPVRPPTPVSDGSFYFPPNVSTVPNMPGMPMSIGVGPTFTGPQHMIYNPQVAQMPSQPYFHPNGPQYGQLIGHPRQVLYMPSYLPPEMPYKGRDY* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0280 637 Coils Coil 242 262 - -
Ahy18g0280 637 MobiDBLite consensus disorder prediction 396 470 - -
Ahy18g0280 637 MobiDBLite consensus disorder prediction 482 552 - -
Ahy18g0280 637 PANTHER ATAXIN-2 HOMOLOG 4 630 - -
Ahy18g0280 637 PANTHER ATAXIN 2-RELATED 4 630 IPR045117 GO:0003723
Ahy18g0280 637 SMART LsmAD_2 221 292 IPR009604 -
Ahy18g0280 637 Gene3D - 68 138 - -
Ahy18g0280 637 MobiDBLite consensus disorder prediction 337 362 - -
Ahy18g0280 637 MobiDBLite consensus disorder prediction 483 542 - -
Ahy18g0280 637 MobiDBLite consensus disorder prediction 396 436 - -
Ahy18g0280 637 MobiDBLite consensus disorder prediction 1 38 - -
Ahy18g0280 637 MobiDBLite consensus disorder prediction 323 369 - -
Ahy18g0280 637 MobiDBLite consensus disorder prediction 437 470 - -
Ahy18g0280 637 Pfam LsmAD domain 221 291 IPR009604 -
Ahy18g0280 637 MobiDBLite consensus disorder prediction 15 29 - -
Ahy18g0280 637 Pfam Ataxin-2 C-terminal region 518 529 IPR009818 -
Ahy18g0280 637 Pfam Ataxin 2 SM domain 61 145 IPR025852 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0280 Ahy-Chr18 2319952 2326599 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0280 - - gmx:100812754 948.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0280 18 2319952 2326599 Ahy18g0280 18 2319952 2326599 ECH
Ahy18g0280 18 2319952 2326599 Ahy8g1069 8 25709330 25715992 hybridization
Ahy18g0280 18 2319952 2326599 Ahy19g1063 19 17553258 17561930 PCT
Ahy18g0280 18 2319952 2326599 Ahy9g0817 9 13451523 13460136 PCT
Ahy19g1063 19 17553258 17561930 Ahy18g0280 18 2319952 2326599 PCT
Ahy9g0817 9 13451523 13460136 Ahy18g0280 18 2319952 2326599 PCT