Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g3012 ATGGACTCTGTTCCTTTCCACGATGGCAACATCCACCATATTCTCGAAACCCGATACCTTCACTCTCGCCAAGATGTTAATCATAGGTTGCAGACACACTCCTCGTTGATTCGCAGGCTTACTCAGGAGAGAGAGTTAGAGGGCCACCTTGGCTGTGTCAATGCTGTGGCTTGGAATTCCAGAGGCTCATTATTGATATCTGGATCAGATGATACACGGATCAATATTTGGAACTATGCTGATCGGAAACTTCTACATTCGATTGACACTGGTCATACTGCAAATATTTTCTGTACAAAGTTTATACCAGAAACTTCTGATGAGATTGTAGTCTCGGGAGCTGGAGATGCTGAAGTCCGATTATTTAATTTGTCTCACTTAAATGGATCTGCTGAAAATGCCATTGCTCCATCAGCACTTTACCAATGCCACACAAGGAGAGTCAAGAAGTTGGCTGTTGAAAATGGAAACCCTAACATGGTATGGAGTGCTAGTGAAGATGGGACCTTGAGGCAGCATGATTTTCGAGAGGGAACATCTTGTCCGCCAGCAGGATCTTCGCACCAAGAGTGTAGAAGTGTTCTAGGACATCCAAGCTTGCACTTAACTCATGTTACATTTGGTCCTGATGGAGATGAGGTTCTCCTTAGCTATAGTGGAGAGCATGTTTACTTGATGAATGTTAATCATGCTGGATTGAATGACATGCAATATACTTCAGGAGATGTATCAAAACTAATGACATATTCTCCAACAATTAATGGAATGGAATTGCAACCTTCTATATCCAGTGTTTTCCCAAATGGATTTTCAATAAAAAAGAATGTTGCTGCAAAGATTGACTACTGCAGGAAACTAATAAAATACGCTGAAAAGACCTTGAATGATGGTCCTTATTATGGAATTGAGGCATGTAATGAAGTTTTGAATTGCTACAGTCTTACTATTGGGCCTGCACTAAAATATGAATGCCTGTGTATTCGAGCTGCACTATTGCTTAAGAGGAAGTGGAAAAATGATGCTCACATGGCCATAAGGGACTGCTGTGCTGCTAGGAAAATTGATAACTACGACTACAAAGCACTTTACTATATGTCAGATGCATTGTCACAGTTAGGAAGGCACAAAGAAGCATTGGATTTTGCTGTTGCTGCTCAGCTGTTGGCCCCATCCATACCTGAAGTTGCAGAAAGAGTAGAGAAAGCTAAGAAGGACATTTCTTCAGCCGAGGCAGAGAAAAATAACAAGACAAATGATGGAGGATCAAGATTCGATAGTCGAGGTGGGAGAATTTTGTCATTAAGTGACATACTCTATCGTTCGGAGGCTAACAGTGATGCTTCCCAAGATGGTCCAAGATCAGAGAGGGATGACTCTGATTATGATGAGGAGTTGGAGTTGGACTTTGAAACATCAATGTCTGGTGATGAGGGACATGATGTTGAGTCCAATATTCTTCATGGGAGTTTAAACCTTAGAATTCACCGAAGGGGCGACTCCAGAGAAAGCACTGGTGCGAATGGCACCGTTGAATCACCTTCGTCCTCATCACAGAATGACAAAGCTTATCAGTCTGAAGCAGCTATTGACATGAATCAAAGATTTATTGGCCATTGCAATGTTGGAACTGATATAAAACAGGCCAGTTTTCTTGGTCAAAGAGGTGAGTTTGTTGCTAGTGGAAGTGATGATGGCAGATGGTTTATCTGGGAAAAGCGAACTGGTAGACTCATAAAAATGCTGAACGGTGATGAATCTGTTGTAAATTGTGTACAATGCCATCCATTTGATTTTGTTGTGGCAACAAGTGGAATTGATAGCACAATAAAGTTATGGACTCCAAGTGCCCCTGTTCCATCTGCCGTAGCTGGTGGTGCAGCGGGACCAGAGACTGCTGATGTATTGGTTGCTATGGAGAGCAATCAACAAAAGTTATCCCGTGGTCGTGATTCCATTCTGCCCTTTGAGCTTTTGGAGCCATTTAGAATGCATGAGTTTCCCGAAGGATCCCTGCGCCTGCGTCCTTTTGAATGTGCCCAGAGCTAA 2046 0.4252 MDSVPFHDGNIHHILETRYLHSRQDVNHRLQTHSSLIRRLTQERELEGHLGCVNAVAWNSRGSLLISGSDDTRINIWNYADRKLLHSIDTGHTANIFCTKFIPETSDEIVVSGAGDAEVRLFNLSHLNGSAENAIAPSALYQCHTRRVKKLAVENGNPNMVWSASEDGTLRQHDFREGTSCPPAGSSHQECRSVLGHPSLHLTHVTFGPDGDEVLLSYSGEHVYLMNVNHAGLNDMQYTSGDVSKLMTYSPTINGMELQPSISSVFPNGFSIKKNVAAKIDYCRKLIKYAEKTLNDGPYYGIEACNEVLNCYSLTIGPALKYECLCIRAALLLKRKWKNDAHMAIRDCCAARKIDNYDYKALYYMSDALSQLGRHKEALDFAVAAQLLAPSIPEVAERVEKAKKDISSAEAEKNNKTNDGGSRFDSRGGRILSLSDILYRSEANSDASQDGPRSERDDSDYDEELELDFETSMSGDEGHDVESNILHGSLNLRIHRRGDSRESTGANGTVESPSSSSQNDKAYQSEAAIDMNQRFIGHCNVGTDIKQASFLGQRGEFVASGSDDGRWFIWEKRTGRLIKMLNGDESVVNCVQCHPFDFVVATSGIDSTIKLWTPSAPVPSAVAGGAAGPETADVLVAMESNQQKLSRGRDSILPFELLEPFRMHEFPEGSLRLRPFECAQS* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g3012 681 PANTHER WD AND TETRATRICOPEPTIDE REPEATS PROTEIN 1 200 680 - -
Ahy17g3012 681 SMART WD40_4 528 571 IPR001680 GO:0005515
Ahy17g3012 681 SMART WD40_4 81 123 IPR001680 GO:0005515
Ahy17g3012 681 SMART WD40_4 134 174 IPR001680 GO:0005515
Ahy17g3012 681 SMART WD40_4 188 227 IPR001680 GO:0005515
Ahy17g3012 681 SMART WD40_4 574 613 IPR001680 GO:0005515
Ahy17g3012 681 SMART WD40_4 39 78 IPR001680 GO:0005515
Ahy17g3012 681 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 200 680 IPR045151 -
Ahy17g3012 681 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 8 195 IPR045151 -
Ahy17g3012 681 SUPERFAMILY TPR-like 321 397 IPR011990 GO:0005515
Ahy17g3012 681 MobiDBLite consensus disorder prediction 491 523 - -
Ahy17g3012 681 MobiDBLite consensus disorder prediction 403 420 - -
Ahy17g3012 681 MobiDBLite consensus disorder prediction 442 461 - -
Ahy17g3012 681 Pfam WD domain, G-beta repeat 44 78 IPR001680 GO:0005515
Ahy17g3012 681 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 46 78 - -
Ahy17g3012 681 MobiDBLite consensus disorder prediction 503 523 - -
Ahy17g3012 681 ProSiteProfiles Trp-Asp (WD) repeats profile. 46 87 IPR001680 GO:0005515
Ahy17g3012 681 Coils Coil 392 419 - -
Ahy17g3012 681 MobiDBLite consensus disorder prediction 403 428 - -
Ahy17g3012 681 Gene3D - 532 630 IPR015943 GO:0005515
Ahy17g3012 681 Gene3D - 18 266 IPR015943 GO:0005515
Ahy17g3012 681 ProSiteProfiles Trp-Asp (WD) repeats profile. 581 612 IPR001680 GO:0005515
Ahy17g3012 681 SUPERFAMILY WD40 repeat-like 39 612 IPR036322 GO:0005515
Ahy17g3012 681 PANTHER WD AND TETRATRICOPEPTIDE REPEATS PROTEIN 1 8 195 - -
Ahy17g3012 681 Gene3D Tetratricopeptide repeat domain 271 423 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g3012 Ahy-Chr17 130702102 130712183 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g3012 K11807 - gmx:100793917 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g3012 17 130702102 130712183 Ahy17g3012 17 130702102 130712183 ECH
Ahy17g3012 17 130702102 130712183 Ahy8g0713 8 13960868 13970877 hybridization