Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2948 ATGTTGAGGATCCCGGACAACAACAACACCAATAGAAGGAACAACCTTGAAACTACCAGGAATCGCAGAGACGACAATGAATCTTCCTTGTTCGGTGGCGTTCCCAATAACACCTCGCCGCCATTGATGAACCTTCGCCCCGACCACGTTGCCGTCGGCTCACCTCTCACCAACAGAGCCCCTTTCACCACCACCAACAACAACAACGCCGCCGCCTCTCGTTTCTCGGCCGCAGACGGTGGCCCTGTCGGCAGTTCTCCTTATCCAGCTCAGTATCGCGGCGACCACTGTCTCTGGATGGACACCGATCAGGCGTCGGGATTCCACGTGGCAAACACCACCTTCGGCGCCGACAAATGGGTCGACGATCTGGGAGGAGGAGGAGGAAACGCACTGGCCAACAACTTCTCAAGAATGAGCATCGTCGAAAACGGAACCACCAAAAGCAGAAGCCCATACGACGTCGTGGAGGCTTACAGCAACAACAACAACGCATGCTCCATTGATTCCAATAACCTCCCTTTCTTCGATGAAACAACACCGCCGCCATTCTGCAACAACGCTGCTGGGGTTCCCGTATCGGTGACCCCAGGTTTTGTTCCCAAAGGTTACGCTTTTGAAGCTTCTCCAATGGCTCCGCAGCATCATGATCACCATGTGTACCATCACCATCATCACATCATGGACCAGAGGATGATGAAACAGGCTACAAGTGATAACAACCTTCATCAGTTGCAGCAGAAGCCGCAGCAGCAGCCGCCGCCAACACCGGCTTTCGTAAACCCTTACGTTTGTGACCGTTTCGTTGGGTCTCATCAGCAGCATTTCGGCGTCGAGTGTGAACCTCCCAATGGATGGGGCGGCGGCGTCAAGAACCCCTTCAGATTCTCTCAGATAATGCACCCTAGGCTCCCAGCGAATGCGCCCAGGGATATGGCGGCAATGGCAGTTGCTGCTGCCGCCGCCGCCGCTAACAGCGGTGAGTTTCCTCAGTGTATTTCTCCGATGAGAAATGGTGGTGACCGTGCTGCCTTTAGATGCGATAACAGCGTCATTATCCAAGGAAGAGAAATGGTAAAACCCTGCGTGGAAAGCACTGGTTACGGTGGTTCCGTAAGAGGTTTCAAGAAGGGTCACGGTCAAGGACAGGTTCCATGCGATGAGCTTCATCATCATCATCATCATCATAATAATGGCCAAGGTGGTGGTGGTGGTGGTGGAAACAACAACAATAACACCAACAACAACAATGGCGGTTTCGTGAGGGATCCATCGTCGGTGCCATTGATGCTGGATTTCTATAACCTAGCTGAGGCGCAGGGTTACGTGTACAACATGGCGAAGGACCAGAACGGTTGCAGGTTTTTGCAGAGGATGGTTGAAGAAGGCACCTTTGAGGATGTAAGGGTGGTTTTTGAAGGGATCGTTGAGAATGTTGTGGAGCTCATGATGGACCCTTTTGGTAACTACCTTGTTCAGAAGCTTCTAGATGTTTGCAATGAAGATCAAAGGTTGCAAATTGTTCTCATGCTCACTAAAGAACAAGGCCAGCTTGTCCGAATCTCCTTGAATACCCACGGTACGCGCGTGGTGCAGAAGCTGATTGAGACCCTCAACTCAGCGAAGCAAATTTCATTGGTGAAGGGTGCAATTCAACCAGGTTTCCTTGACCTTATTAAGGATCTCAATGGAAACCATGTCATACAACGTTGCCTGCAATGTCTTAGCTGTCAAGATAATGAGTTTATTTTTGAAGCTGGTGTAAAGTTTTGTGTTGACATAGCTACTCATCGACATGGATGCTGTGTACTACAACGTTGCATTGATTATTCCGTTGGAAAACATCGTGAGAGGCTGGTCGCAGAAATTTGCAAGCATGGTCTTCTCCTCGCTCAGGATCCATTTGGAAACTATGTTGTTCAGTATATTATAGAGATAGAGAACCCAACTGCCTCAACGAAATTGATGTCTCAGCTGAAAGGGAATTTTGTGAACCTGTCTACACAAAAATTCAGCAGCCATGTGGTTGAGAAATGCCTCAAGCATGTTGCAGATAGCAGGTCCAGAATTGTCCGTGAATTGCTCTCTACACCCCACTTTGAGCAGTTATTGCAAGACCCTTATGCCAACTACGTCATTCAATCTGCTCTTGCATATACCAAGGGTGCACTTCATGTATCATTGGTGGAAGCAGTTAGGCCTTACAAGATCTTGCGCACTAGTCCATACTGCAAGAGGATATTCTCTGGAAGCCTACTTAAGAAGTGA 2268 0.4929 MLRIPDNNNTNRRNNLETTRNRRDDNESSLFGGVPNNTSPPLMNLRPDHVAVGSPLTNRAPFTTTNNNNAAASRFSAADGGPVGSSPYPAQYRGDHCLWMDTDQASGFHVANTTFGADKWVDDLGGGGGNALANNFSRMSIVENGTTKSRSPYDVVEAYSNNNNACSIDSNNLPFFDETTPPPFCNNAAGVPVSVTPGFVPKGYAFEASPMAPQHHDHHVYHHHHHIMDQRMMKQATSDNNLHQLQQKPQQQPPPTPAFVNPYVCDRFVGSHQQHFGVECEPPNGWGGGVKNPFRFSQIMHPRLPANAPRDMAAMAVAAAAAAANSGEFPQCISPMRNGGDRAAFRCDNSVIIQGREMVKPCVESTGYGGSVRGFKKGHGQGQVPCDELHHHHHHHNNGQGGGGGGGNNNNNTNNNNGGFVRDPSSVPLMLDFYNLAEAQGYVYNMAKDQNGCRFLQRMVEEGTFEDVRVVFEGIVENVVELMMDPFGNYLVQKLLDVCNEDQRLQIVLMLTKEQGQLVRISLNTHGTRVVQKLIETLNSAKQISLVKGAIQPGFLDLIKDLNGNHVIQRCLQCLSCQDNEFIFEAGVKFCVDIATHRHGCCVLQRCIDYSVGKHRERLVAEICKHGLLLAQDPFGNYVVQYIIEIENPTASTKLMSQLKGNFVNLSTQKFSSHVVEKCLKHVADSRSRIVRELLSTPHFEQLLQDPYANYVIQSALAYTKGALHVSLVEAVRPYKILRTSPYCKRIFSGSLLKK* 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2948 755 ProSiteProfiles Pumilio RNA-binding repeat profile. 622 657 IPR001313 GO:0003723
Ahy17g2948 755 MobiDBLite consensus disorder prediction 1 15 - -
Ahy17g2948 755 ProSiteProfiles Pumilio RNA-binding repeat profile. 474 510 IPR001313 GO:0003723
Ahy17g2948 755 SMART pum_5 586 621 IPR001313 GO:0003723
Ahy17g2948 755 SMART pum_5 695 730 IPR001313 GO:0003723
Ahy17g2948 755 SMART pum_5 550 585 IPR001313 GO:0003723
Ahy17g2948 755 SMART pum_5 438 473 IPR001313 GO:0003723
Ahy17g2948 755 SMART pum_5 474 509 IPR001313 GO:0003723
Ahy17g2948 755 SMART pum_5 513 548 IPR001313 GO:0003723
Ahy17g2948 755 SMART pum_5 658 692 IPR001313 GO:0003723
Ahy17g2948 755 SMART pum_5 622 657 IPR001313 GO:0003723
Ahy17g2948 755 MobiDBLite consensus disorder prediction 379 421 - -
Ahy17g2948 755 PANTHER PUMILIO HOMOLOG 7, CHLOROPLASTIC-RELATED 410 755 - -
Ahy17g2948 755 Pfam Pumilio-family RNA binding repeat 443 475 IPR001313 GO:0003723
Ahy17g2948 755 Pfam Pumilio-family RNA binding repeat 662 695 IPR001313 GO:0003723
Ahy17g2948 755 Pfam Pumilio-family RNA binding repeat 517 544 IPR001313 GO:0003723
Ahy17g2948 755 Pfam Pumilio-family RNA binding repeat 591 624 IPR001313 GO:0003723
Ahy17g2948 755 Pfam Pumilio-family RNA binding repeat 478 508 IPR001313 GO:0003723
Ahy17g2948 755 Pfam Pumilio-family RNA binding repeat 555 585 IPR001313 GO:0003723
Ahy17g2948 755 Pfam Pumilio-family RNA binding repeat 699 720 IPR001313 GO:0003723
Ahy17g2948 755 Pfam Pumilio-family RNA binding repeat 629 657 IPR001313 GO:0003723
Ahy17g2948 755 ProSiteProfiles Pumilio RNA-binding repeat profile. 550 585 IPR001313 GO:0003723
Ahy17g2948 755 SUPERFAMILY ARM repeat 436 748 IPR016024 -
Ahy17g2948 755 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 416 755 IPR033133 GO:0003723
Ahy17g2948 755 MobiDBLite consensus disorder prediction 402 421 - -
Ahy17g2948 755 ProSiteProfiles Pumilio RNA-binding repeat profile. 513 548 IPR001313 GO:0003723
Ahy17g2948 755 Gene3D - 431 752 IPR011989 -
Ahy17g2948 755 MobiDBLite consensus disorder prediction 1 45 - -
Ahy17g2948 755 MobiDBLite consensus disorder prediction 235 249 - -
Ahy17g2948 755 MobiDBLite consensus disorder prediction 235 256 - -
Ahy17g2948 755 ProSiteProfiles Pumilio RNA-binding repeat profile. 586 621 IPR001313 GO:0003723
Ahy17g2948 755 ProSiteProfiles Pumilio RNA-binding repeat profile. 658 696 IPR001313 GO:0003723
Ahy17g2948 755 CDD Pumilio 441 749 IPR033712 GO:0003723
Ahy17g2948 755 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 410 755 - -
Ahy17g2948 755 ProSiteProfiles Pumilio RNA-binding repeat profile. 438 473 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2948 Ahy-Chr17 129477003 129482160 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2948 - - aip:107608433 1380.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2948 17 129477003 129482160 Ahy17g2948 17 129477003 129482160 ECH
Ahy17g2948 17 129477003 129482160 Ahy8g0651 8 12858065 12861771 hybridization
Ahy17g2948 17 129477003 129482160 Ahy17g2948 17 129477003 129482160 PCT
Ahy17g2948 17 129477003 129482160 Ahy8g0651 8 12858065 12861771 PCT
Ahy8g0651 8 12858065 12861771 Ahy17g2948 17 129477003 129482160 PCT