Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2872 ATGGATATAAACAGAATCCAATTAGCTCTGCGCTCTTGTGGGATCTTTCAATCTATCAAACACGCCAAATCACTTCACTCTTGCATCATAAAACTTGGCTTTCTGAATCATGTTTTCCTCGTAAACAACATGATCTCTGTCTATGCAAAGTGTCTCCATGTAGATGATGCGCGAAACCTGTTTGACGAAATGCCTCACAGAAATATCGTTACTTGGACCACAATGCTCTCTGCATACACCAATTCTGGGAGTCCCCACGTGGCCCTTTCGCTTTACAATCAGATGCTGCAATCCGAAACAGAGGAACCCAATGGGTTCTTGTACTCGGCGGTTCTCAAGGCCTGTGGTCTAGTGGGTGATGTTGAACTGGGTAGGTTTGTTCACCAGCATGTAGCTCAGGCGAAAATGGAATTTGACACTGTTCTGATGAATGCACTTTTGGACATGTACGTCAAATGTGGGAGCTTGAAGGATGCAAAGCGAGTTTTTTATGAGACCCCACTTAAGAATTCGACTTCATGGAACACGCTCATTCTGGGTCATGCTAAAAGTGGCTTGGTGGGCGATGCTCTGAAGCTGTTTGATCAAATGCCGGAACGTGATCTTGTTTCTTGGAATAGCATCGTTGCTGGTCTAGCAAGTACTGGAAGCCCCCATGCATTGCAGTTTGTTGCTAGGATGCACGTGCAAGGCTTTAAACTAGATGAGTTCACATTCCCACGCGCTCTCAAAATTTGCGGTCAGGTTGGTGAAATAGCAACGGGGAAACAAATTCATTGTTATGTTATCAAGTCAGGGTTTGAGTCTTGCAATTACTGTATATCATCGTTGATTGATATGTATTCGAATTGCAAGTTATTGGATGAAGCAATGTTGATCTTTGATCAGTTCTTCGACAATTCTTTTGTTGTCGAAAGCTTGGCACTTTGGAATTGTATGCTTTCTGGATATGTTGTCAATGGGAATTATGGAAAGGCTCTTAGTCTGATTGCACATATCCATAAAACTGGTGCATATTTCGATTCCTATACCTTTAGTATTGCTTTAAAGGTTTGTATGTACTTCCAGAACTTGAGGTTGGCATCTCAGGTGCATGGTTTGGTCATCACAAGTGGCTATGAGTTAGATTGCGTTATTGGAAGCATTCTTATTGATCTCTATGCGAACCAGGGGAATATTAATATTGCTTTGAGATTGTTTGAAAAGTTGCCAGATAAAGATGTTGTGGCTTGGTCTAGTGTGATTGCTGCTTGTGCTAGATCTGGCTTAGATTCATTGGCTCTATCCCTCTTTACGAATATGACTCGTATGGATCTTGAGATTGACCATTTTATCCTTACAGTTGTTCTTAAAGTTTGTTCAACCTTGGCATCTCAGAGAATTGGAAAGCAAATTCATGCTAACTGTCTTAAAAAGGGATATGAATCAGAGGGAGTTATTGCAACTGCTCTTATTGATATGTACTCAAAATGTGGTGACATTGAGGATGCCTTAGCGTTGTTTGGCTGTCTTTCAGAAAGAGACACTATGTGTTGGACAGGGATTATTGTTGGATGTGCACAAAACGGAAGAGTAGACGAGGCAATCAATCTTTTGCATAAGATGATAGAATCTGGTGAAAAGCCAAATGAAATCACCATTCTAGGTGCTCTTACGGCTTGTAGGCATGCTGGCCTAGTTGAAGAGGCATGGGCCATATTTAATTCTGTTGAAACAGACCATGGATTGAAAAGGTGCCTAGAGCATTACAGTTGTATGGTTGATCTACTTGGTCAAGCAGGACGCTTCGAAGAAGCACTAAAATTGATTAGTGACATGCCATTTAAGCCTGACAAGACGATATGGTTCTCCTTGCTTGGCGCTTGTGGAACTCACAAGAACCAGTATCTTGCTAATGTTGTTGCTGAGCATCTTCGTGCTACATTTCCAGAGGATGCTTCTGTATATGTAATGCTGTCAAACGTTTATGCAACTCTTGGAATGTGGGATAGTTTAAGCGAAGCAAGGGAAGCCTTGAAAAAAGTAGGCTTAAAAGGAGCTGGAAAAAGCTGGATTGAGATCTCAAGTTGA 2070 0.4164 MDINRIQLALRSCGIFQSIKHAKSLHSCIIKLGFLNHVFLVNNMISVYAKCLHVDDARNLFDEMPHRNIVTWTTMLSAYTNSGSPHVALSLYNQMLQSETEEPNGFLYSAVLKACGLVGDVELGRFVHQHVAQAKMEFDTVLMNALLDMYVKCGSLKDAKRVFYETPLKNSTSWNTLILGHAKSGLVGDALKLFDQMPERDLVSWNSIVAGLASTGSPHALQFVARMHVQGFKLDEFTFPRALKICGQVGEIATGKQIHCYVIKSGFESCNYCISSLIDMYSNCKLLDEAMLIFDQFFDNSFVVESLALWNCMLSGYVVNGNYGKALSLIAHIHKTGAYFDSYTFSIALKVCMYFQNLRLASQVHGLVITSGYELDCVIGSILIDLYANQGNINIALRLFEKLPDKDVVAWSSVIAACARSGLDSLALSLFTNMTRMDLEIDHFILTVVLKVCSTLASQRIGKQIHANCLKKGYESEGVIATALIDMYSKCGDIEDALALFGCLSERDTMCWTGIIVGCAQNGRVDEAINLLHKMIESGEKPNEITILGALTACRHAGLVEEAWAIFNSVETDHGLKRCLEHYSCMVDLLGQAGRFEEALKLISDMPFKPDKTIWFSLLGACGTHKNQYLANVVAEHLRATFPEDASVYVMLSNVYATLGMWDSLSEAREALKKVGLKGAGKSWIEISS* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2872 689 TIGRFAM PPR: pentatricopeptide repeat domain 583 606 IPR002885 -
Ahy17g2872 689 TIGRFAM PPR: pentatricopeptide repeat domain 309 337 IPR002885 -
Ahy17g2872 689 TIGRFAM PPR: pentatricopeptide repeat domain 173 202 IPR002885 -
Ahy17g2872 689 TIGRFAM PPR: pentatricopeptide repeat domain 70 98 IPR002885 -
Ahy17g2872 689 TIGRFAM PPR: pentatricopeptide repeat domain 511 544 IPR002885 -
Ahy17g2872 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Ahy17g2872 689 SUPERFAMILY TPR-like 466 662 IPR011990 GO:0005515
Ahy17g2872 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 508 542 IPR002885 -
Ahy17g2872 689 Pfam PPR repeat 511 539 IPR002885 -
Ahy17g2872 689 Pfam PPR repeat 173 201 IPR002885 -
Ahy17g2872 689 Pfam PPR repeat 381 407 IPR002885 -
Ahy17g2872 689 Pfam PPR repeat 582 606 IPR002885 -
Ahy17g2872 689 Pfam PPR repeat 310 330 IPR002885 -
Ahy17g2872 689 Pfam PPR repeat 482 506 IPR002885 -
Ahy17g2872 689 Pfam PPR repeat 275 296 IPR002885 -
Ahy17g2872 689 Pfam PPR repeat 142 165 IPR002885 -
Ahy17g2872 689 Pfam PPR repeat 409 437 IPR002885 -
Ahy17g2872 689 PANTHER BNAC03G28070D PROTEIN 38 83 - -
Ahy17g2872 689 Pfam PPR repeat family 67 115 IPR002885 -
Ahy17g2872 689 Gene3D Tetratricopeptide repeat domain 3 122 IPR011990 GO:0005515
Ahy17g2872 689 Gene3D Tetratricopeptide repeat domain 358 463 IPR011990 GO:0005515
Ahy17g2872 689 Gene3D Tetratricopeptide repeat domain 241 357 IPR011990 GO:0005515
Ahy17g2872 689 Gene3D Tetratricopeptide repeat domain 123 199 IPR011990 GO:0005515
Ahy17g2872 689 Pfam E motif 625 686 IPR046848 -
Ahy17g2872 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Ahy17g2872 689 Gene3D Tetratricopeptide repeat domain 480 689 IPR011990 GO:0005515
Ahy17g2872 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Ahy17g2872 689 PANTHER BNAC03G28070D PROTEIN 84 684 - -
Ahy17g2872 689 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 84 684 - -
Ahy17g2872 689 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 38 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2872 Ahy-Chr17 128059579 128070431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g2872 1 687 Glycoside Hydrolase AT3G49170 30.516 3.21e-110 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2872 - - gmx:100780678 1047.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2872 17 128059579 128070431 Ahy17g2872 17 128059579 128070431 ECH
Ahy17g2872 17 128059579 128070431 Ahy8g0586 8 11472266 11478050 hybridization