Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2787 ATGGAAGTGCCGGAGTGTCCGGTGTGCCTCGAACGCTACGACGACCAAGTTTCCATCCCTAGGGTCCTATCTTGCGGTCACTCCGTCTGCGAAGCATGCCTCGTGGAGCTTCCGCTGCGGTTCCCGAACACGATTCGGTGCCCGGCGTGTACACAGCTCGTTAAGTACTCTTCAGAGCAAGGACCTTCGTCTCTTCCAAAGAACATCGACCTTCTCAGGCTTTGCCTCTCTTCATCTTCTTCTTCTTCTTCTTCGCGATCGGTGAAACCGACTCAACGGTCAACGATCGACGGTTGTGATGATCGGTCTGTAATTCGAGATCGGTTCTGGTCCGACGAGTTCTATGCCAAGTGGAAGGACTGGATTCTCCCGCACGACGCAGTTTCGGTGGAGTCCCCACCTGAACCCGAATCCGAACCCAGCGGGTTTGTGTTGCGAGGGCAATTTGGTTCGAGTTCTTCGTTGAAGGGTAGGGTTAGTGTTTGTTCTCGAAATAGCAAGTGTTTGAGCCTTGTTCCTGTTTTTTCTTTACCTCGTGTTTTGAATTGTTCGAAGTTTAAGTTCAGTTATGTTGCGAGGATTATGGAATGTTTGGTGGGGATGAAGGAGGCTGTGAGGGAGGAGTTAGCTTTGATTCTAGAAGCTTCTGTGAGGCAGGGCAGGGTTTTTAGGGTTTATGGGCTGTGGAGTGAAGTGGAGGTATTGGATGGGTCATTGTACCTGGTGTGTGAAAGGCACAATGGTGGTAGCATTTTGCAGAAGTTTGGTGAATTGAAGAATGGGTTCCTTGGTTTGGGATTGGAAGATAAAAAAGATGGGATTTTAAGCTTTGCTGTGATTGGGAAGAGTGTGTGTGATTCTGTGCTGGCTTTGCATTTGGAAGGTTTGGTTGCTGGTTGTTTAGGACCTTCGTGCTTTGCTTTCGATGAGCTTGGTGGTGTTTGTGTTGATTTGAATGAGGTTTTGGTTATGAGAAGGAAGACTGTGTATAGTTTTTCTGGTGGCAACAAGGTTAGGCAGAAAGAAGAGGGATTGTTTAAGGGTTGTTTAAAAAATGAGCTTTTTTTATGCCCTGAGGTTTTGTTTCGATTACTGCAGAAGAATGCTGCTGTTAATCCGGAGGATGAGCATTCCAGATATCCGTTCGGGTATGGCTCAGATGTGTGGTCATTGGCTTGTGTGCTGTTGTGGCTTCTCATTGGAGATGCACTCCCTCAGATTCCCTTTGAAATGAGTGAAGAGAATGGCTTTGACTTATCAGCTAGTTATGTTTGTTGGGCGGAGAAAGTTAGTTCTGTTTTGGAAGACAAACTTGGCTCTGAATATCCGTCATTGAGGGGGACACTTTGCAAATGTTTGGACATGAATCCGGGAAACCGCATGAGTGTGGTGGATGTGCGGAAGTGCATTCAGGATATGTTACTCAAACCTGAATTCGATTTTCTGGAAAACTTGGAGGTTACGGTTAATCGGAGCAGCACTGGTTGCTGCTTGGTTTTTGGTGAGTTCAGTCAAGGACAATGTGAGTTGAATGAAAAAGAAGACAATGGGCCACCAGATGTTGTTGATGGGGAAGAGAAACCTGATGCAGATTTGGTTGCTAGCTTATCTAAGGGAATGACTGAACTTAAAGATCTGCGAGGACATCTGGATTGTATCTCTGGACTAGCAATTGGCGGGGGATATCTGTTTAGCTCTTCGTTTGATAAAACTGTCAAAGTATGGTCGTTGCTGGACTTTTCTCTTTCACACACGTTTAAAGGTCATGAGGATAAAGTCATGGCTATAGTTTATGTAGATGATAAAGAACCATTGTGTGTAAGTGGTGATAATGGAGGGGGCATATTTGTCTGGGGGCTTTCTGCTCCTCTCAGGCAAGACCCCTTAAGGAAATGGTATGAGCAGAAGGATTGGCGCTTCAGTGGTATCCATTCCTTAACTGTTTCAGCAAGTCGTTGTCTCTACACTGGAAGTGGAGATAGAACAATAAAAGGTTGGTTGTTAAAGGATGGAACTTTGATGTGCACAATGACTGGTCATAGGTCTGTAGTTTCCACTCTTGTAGTGTGTGATGAGGTTCTTTACAGTGGTAGTTGGGATGGAACCGTTCGGTTGTGGAATCTTAGCGATCACAGCCCATTGACAGTGCTAGGGGAAGGTATGCCTGGAGAAATGAAGTCTATCCTAGCTATTACTGTTGATAGACATTTGCTTGTTGCGGCGTATGAGAACGGCTGCATAAAGGTATGGAGAAATGATGTGTTCATGAGTTCCAAATCATTACATAATGGTGCCATTTTTGCTATGAGCATGCAAGGGCAATGCCTTTATACAGGAGGCTGGGACAAAAATATAAATATACAGGAATTAGCTGGAGACGACGAATTGGATGTCAGAGCATTTGGAACCATTTCTTGCAGTTCTGTTGTAACGGCTATTTTAAGCTGTCAAGGAAAACTTTTTGTTGGATATGCTGACAAGTCTATCAAGGGGACGCTAGGTAGTATTAGAAAGAGTCTCAACGATTTCATGAGCTTGAACTACTGGGTTGTTCGTGATTACTACCGCCTTGTTAGCTCTGTTAACTCCTTCGAGCCCCACATTCAGAAACTCTCCGACGAACAGTTAACGGCCAAGACGGAGGAGTTTCGCAGGAGGCTCGGACGTGGCGAGACCCTTGGAGATATTCAAGCTGAGGCGTTTGCTGTTGTTCGTGAAGCTGCAAGGAGGAAGCTTGGGATGCGCCATTTTGATGTTCAGATTATTGGTGGGGCAGTGCTGCATGATGGGTCAATTGCCGAGATGAAAACAGGGGAGGGGAAAACGTTGGTTTCCACGTTAGCAGCGTATCTTAATGCCCTCACTGGTGAGGGTGTTCATGTGGTAACCGTCAATGATTATTTAGCTCAGCGTGATTCTGAATGGATGGGGCGTGTTCATTGCTTCTTAGGTCTTTCTGTAGGCCTTATTCAGAAGGGGATGAATGCTGCAGAGCGGAGATCCAACTATAGATGTGATATAACATATACCAATAACTCTGAACTTGGCTTTGATTATTTACGAGATAATCTTGCTGGAAATAGGGAAGACCTTGTGATGAGATGGCCAAAGCCATTTCATTTTGCAATTGTTGATGAAGTGGATTCTGTCCTGATAGATGAAGGAAGAAATCCTTTGTTAATCAGCGGTGAGGCTAGTAAAGATGCTGCACGATATCCTGTTGCTGCAAAAGTAGCTGAACTGCTTGTGCAGGGCACTCATTATAACGTGGAGCTTAAAAATCAGTCAGTGGAGTTGACTGAGGAAGGAATTGCTCTTGCTGAAATGGCTCTTGAAACCAATGACCTTTGGGATGAAAATGATCCCTGGGCTAGGTTTGTGATGAACGCTTTAAAAGCTAAAGAGTTCTATCGCCGAGATGTGGAGTACATAGTCCGAGATGGGAAGGCTTTAATTATCAATGAGCTGACAGGAAGAGTTGAAGAGAAACGGAGATGGTCTGAGGGGATTCACCAGGCTGTGGAGGCAAAGGAAGGTTTGAAGATTCAGGCAGATTCCGTTGTTGTGGCACAAATCACTTACCAGTCATTATTCAAGCTCTATCCAAAATTGTCAGGAATGACTGGGACTGCAAAAACAGAAGAGAGAGAATTCATAAAAATGTTCCAGATGCCAGTCATTGAAGTGCCCACAAATCTTCCTAATATTCGTAAAGATCTTCCTATTCAAGCTTTCGCCACTGCTCGTGGGAAATGGGAGCAAGTTCGCCGAGAAGTTGAATATATGTTTAGACAAGGCCGTCCTATCTTAGTTGGGACAACTAGTGTAGAAAATTCTGAACTTTTGGCTGGTCTGCTTTGGGAGTGGAATATTCCCCACAATGTCCTGAATGCTCGACCCAAGTATGCTGCAAGAGAAGCTGAAATTGTTGCACAGGCAGGACGCAAACATGCCATTACCATCTCTACAAATATGGCAGGCAGGGGCACAGATATAATCCTTGGAGGAAATCCAAAAATTCTTGCCAGAGAAATTATAGAGGATAGCATAATTCATTTATTGACACAACAGGATCCAAATGTTGAACTTGCTAGTGAGACGGTTTCGCAACAGGTGCTTCCAAAGATAAAGGTTGGATCATCATCAATGGCCTTACTGGCTAAGGCAACCTTAATGGCCAAATATGTCTCGAAAAGTGAGGGTAGAAACTGGACATATCAGAAGGCTAAATCCTTTATCACAGAGGCTATTGAATTTAGTCTGTCATATAGTTTTAAGGAGCTGGAGGAGCTTGCTAATGAAGATTCTGAATTTTACCCTCTTGGTCCAACAGTAGCACTTGCCTATGTGTCAGTTCTGAAGGATTGTGAAGAGCACTGTTTGCATGAAGGCTCTGAAGTTAAAAGGCTTGGTGGCCTTCATGTAATTGGTACATCTTTACACGAGTCCCGGAGAATAGATAACCAGCTCCGTGGCAGAGCAGGAAGGCAGGGAGATCCAGGTTCAACACGATTTATGGTTAGCTTGCAGGACGAGATGTTTCAAAAGTTCAATTTTGATACGGAATGGGCTGTCAGACTTATATCAAAGATTACAAATGATGAGGATATGCCAATTGAGGGTGATGCCATTGTGAAGCAGCTCTTGGGGTTGCAAATCAATGCAGAGAAGTTCTTCTTCAGCATAAGAAAGAGCCTAGTTGAATTTGATGAAGTATTGGAGGTACAGCGAAAGCATGTTTATGATCTAAGGCAGTTGATCTTGACTGGAGATGATGAAAGCTGTTCCCAACACATATTCCAGTACCTGCAAGCAGTTGTGGATGAGATTGTCTTCAGTAACATCAATCCAATGAAGCATCCATGTACCTGGAGTTTGAGTAAGCTCTTGAAAGAGTTTATGACAATTGGTGGAAAGCTGCTTCATGAATCTTTTGGAGGGATCACCGACGACTCTTTGTTAAACTCACTTGGGCAACTGAATGATGCGGGTTCCATTGATATTGTCAACTTTTCCCTTCCAAATCTGCCCACACCTCCAAATGCATTCAGGGGAATCCGCAGGAAAAGTTCTTCGTTGAGACGTTGGCTTGTTATTTGCTCTGATGATCTAATTGAGAACGGGAAGTATCGGACAACATCTAATCTCCTCCGGAAATATCTTGGAGATTTTCTAATTGCTTCATATCTAAATGTTGTTGAAGAGTCTGGTTATGAAGATAAATATGTCAAGGAAATTGAGAGAGCTGTTCTTTTGAAAACTCTTGATTGCTTCTGGAGAGATCACCTTGTAAACATGAATCGGCTCAGCTCTGCGGTGAATATAAGGAGCTTTGGGCACAGAAACCCTCTTGAAGAGTACAAAATTGACGGTTGCCGTTTTTTCATCTCAATGCTTAGTGCAACAAGGAGGTTAACTGTAGAAGCGCTGTTACGGCATTGGTCATCTCCAATGGAATCCCTTGAACTATCTTGA 5475 0.4411 MEVPECPVCLERYDDQVSIPRVLSCGHSVCEACLVELPLRFPNTIRCPACTQLVKYSSEQGPSSLPKNIDLLRLCLSSSSSSSSSRSVKPTQRSTIDGCDDRSVIRDRFWSDEFYAKWKDWILPHDAVSVESPPEPESEPSGFVLRGQFGSSSSLKGRVSVCSRNSKCLSLVPVFSLPRVLNCSKFKFSYVARIMECLVGMKEAVREELALILEASVRQGRVFRVYGLWSEVEVLDGSLYLVCERHNGGSILQKFGELKNGFLGLGLEDKKDGILSFAVIGKSVCDSVLALHLEGLVAGCLGPSCFAFDELGGVCVDLNEVLVMRRKTVYSFSGGNKVRQKEEGLFKGCLKNELFLCPEVLFRLLQKNAAVNPEDEHSRYPFGYGSDVWSLACVLLWLLIGDALPQIPFEMSEENGFDLSASYVCWAEKVSSVLEDKLGSEYPSLRGTLCKCLDMNPGNRMSVVDVRKCIQDMLLKPEFDFLENLEVTVNRSSTGCCLVFGEFSQGQCELNEKEDNGPPDVVDGEEKPDADLVASLSKGMTELKDLRGHLDCISGLAIGGGYLFSSSFDKTVKVWSLLDFSLSHTFKGHEDKVMAIVYVDDKEPLCVSGDNGGGIFVWGLSAPLRQDPLRKWYEQKDWRFSGIHSLTVSASRCLYTGSGDRTIKGWLLKDGTLMCTMTGHRSVVSTLVVCDEVLYSGSWDGTVRLWNLSDHSPLTVLGEGMPGEMKSILAITVDRHLLVAAYENGCIKVWRNDVFMSSKSLHNGAIFAMSMQGQCLYTGGWDKNINIQELAGDDELDVRAFGTISCSSVVTAILSCQGKLFVGYADKSIKGTLGSIRKSLNDFMSLNYWVVRDYYRLVSSVNSFEPHIQKLSDEQLTAKTEEFRRRLGRGETLGDIQAEAFAVVREAARRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDSEWMGRVHCFLGLSVGLIQKGMNAAERRSNYRCDITYTNNSELGFDYLRDNLAGNREDLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDAARYPVAAKVAELLVQGTHYNVELKNQSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVEYIVRDGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEREFIKMFQMPVIEVPTNLPNIRKDLPIQAFATARGKWEQVRREVEYMFRQGRPILVGTTSVENSELLAGLLWEWNIPHNVLNARPKYAAREAEIVAQAGRKHAITISTNMAGRGTDIILGGNPKILAREIIEDSIIHLLTQQDPNVELASETVSQQVLPKIKVGSSSMALLAKATLMAKYVSKSEGRNWTYQKAKSFITEAIEFSLSYSFKELEELANEDSEFYPLGPTVALAYVSVLKDCEEHCLHEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFNFDTEWAVRLISKITNDEDMPIEGDAIVKQLLGLQINAEKFFFSIRKSLVEFDEVLEVQRKHVYDLRQLILTGDDESCSQHIFQYLQAVVDEIVFSNINPMKHPCTWSLSKLLKEFMTIGGKLLHESFGGITDDSLLNSLGQLNDAGSIDIVNFSLPNLPTPPNAFRGIRRKSSSLRRWLVICSDDLIENGKYRTTSNLLRKYLGDFLIASYLNVVEESGYEDKYVKEIERAVLLKTLDCFWRDHLVNMNRLSSAVNIRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVEALLRHWSSPMESLELS* 1825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2787 1824 PANTHER PROTEIN TRANSLOCASE SUBUNIT SECA2, CHLOROPLASTIC 834 1822 - -
Ahy17g2787 1824 SUPERFAMILY Protein kinase-like (PK-like) 218 478 IPR011009 -
Ahy17g2787 1824 Gene3D Helical scaffold and wing domains of SecA 1683 1815 - -
Ahy17g2787 1824 ProSiteProfiles Protein kinase domain profile. 138 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy17g2787 1824 ProSiteProfiles Trp-Asp (WD) repeats profile. 546 585 IPR001680 GO:0005515
Ahy17g2787 1824 Pfam SecA Wing and Scaffold domain 1538 1812 IPR011116 GO:0016020|GO:0017038
Ahy17g2787 1824 SUPERFAMILY Helical scaffold and wing domains of SecA 1711 1821 IPR036266 -
Ahy17g2787 1824 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 677 709 - -
Ahy17g2787 1824 SUPERFAMILY WD40 repeat-like 540 830 IPR036322 GO:0005515
Ahy17g2787 1824 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Ahy17g2787 1824 Pfam zinc-RING finger domain 5 52 IPR001841 -
Ahy17g2787 1824 Hamap Protein translocase subunit SecA [secA]. 835 1816 IPR000185 GO:0005524|GO:0006605|GO:0006886
Ahy17g2787 1824 Gene3D - 1065 1185 - -
Ahy17g2787 1824 ProSiteProfiles SecA family profile. 836 1540 IPR014018 -
Ahy17g2787 1824 CDD DEXDc_SecA 875 1231 - -
Ahy17g2787 1824 PRINTS SecA protein signature 1003 1023 IPR000185 GO:0005524|GO:0006605|GO:0006886
Ahy17g2787 1824 PRINTS SecA protein signature 1193 1210 IPR000185 GO:0005524|GO:0006605|GO:0006886
Ahy17g2787 1824 PRINTS SecA protein signature 896 920 IPR000185 GO:0005524|GO:0006605|GO:0006886
Ahy17g2787 1824 PRINTS SecA protein signature 1156 1178 IPR000185 GO:0005524|GO:0006605|GO:0006886
Ahy17g2787 1824 PRINTS SecA protein signature 1230 1243 IPR000185 GO:0005524|GO:0006605|GO:0006886
Ahy17g2787 1824 PRINTS SecA protein signature 934 948 IPR000185 GO:0005524|GO:0006605|GO:0006886
Ahy17g2787 1824 PRINTS SecA protein signature 950 960 IPR000185 GO:0005524|GO:0006605|GO:0006886
Ahy17g2787 1824 Gene3D - 531 627 IPR015943 GO:0005515
Ahy17g2787 1824 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Ahy17g2787 1824 Gene3D Helical scaffold and wing domains of SecA 1543 1647 - -
Ahy17g2787 1824 ProSiteProfiles Trp-Asp (WD) repeats profile. 677 716 IPR001680 GO:0005515
Ahy17g2787 1824 SMART SecA_PP_bind_2 1064 1175 IPR011130 GO:0016020|GO:0017038
Ahy17g2787 1824 SUPERFAMILY Pre-protein crosslinking domain of SecA 1063 1184 IPR036670 GO:0016020|GO:0017038
Ahy17g2787 1824 Gene3D - 855 1232 IPR027417 -
Ahy17g2787 1824 SMART SecA_DEAD_2 840 1219 IPR011115 GO:0005524|GO:0016020|GO:0017038
Ahy17g2787 1824 TIGRFAM secA: preprotein translocase, SecA subunit 861 1633 IPR000185 GO:0005524|GO:0006605|GO:0006886
Ahy17g2787 1824 Pfam WD domain, G-beta repeat 673 707 IPR001680 GO:0005515
Ahy17g2787 1824 Pfam WD domain, G-beta repeat 542 576 IPR001680 GO:0005515
Ahy17g2787 1824 Gene3D - 628 839 IPR015943 GO:0005515
Ahy17g2787 1824 ProSitePatterns SecA family signature. 1319 1334 IPR020937 GO:0006605|GO:0006886|GO:0016020
Ahy17g2787 1824 SUPERFAMILY Helical scaffold and wing domains of SecA 1544 1641 IPR036266 -
Ahy17g2787 1824 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 844 1232 IPR027417 -
Ahy17g2787 1824 Pfam SecA preprotein cross-linking domain 1071 1175 IPR011130 GO:0016020|GO:0017038
Ahy17g2787 1824 CDD SF2_C_secA 1237 1508 IPR044722 -
Ahy17g2787 1824 SUPERFAMILY RING/U-box 5 58 - -
Ahy17g2787 1824 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1234 1521 IPR027417 -
Ahy17g2787 1824 Pfam SecA DEAD-like domain 851 1218 IPR011115 GO:0005524|GO:0016020|GO:0017038
Ahy17g2787 1824 Gene3D - 1234 1540 IPR027417 -
Ahy17g2787 1824 Gene3D Transferase(Phosphotransferase) domain 1 201 474 - -
Ahy17g2787 1824 SMART serkin_6 143 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy17g2787 1824 ProSiteProfiles Zinc finger RING-type profile. 6 51 IPR001841 -
Ahy17g2787 1824 ProSitePatterns Trp-Asp (WD) repeats signature. 694 708 IPR019775 -
Ahy17g2787 1824 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 922 1085 IPR014001 -
Ahy17g2787 1824 SMART WD40_4 539 576 IPR001680 GO:0005515
Ahy17g2787 1824 SMART WD40_4 710 751 IPR001680 GO:0005515
Ahy17g2787 1824 SMART WD40_4 579 619 IPR001680 GO:0005515
Ahy17g2787 1824 SMART WD40_4 625 667 IPR001680 GO:0005515
Ahy17g2787 1824 SMART WD40_4 670 707 IPR001680 GO:0005515
Ahy17g2787 1824 SMART WD40_4 752 789 IPR001680 GO:0005515
Ahy17g2787 1824 CDD RING-HC_TRIM32_C-VII 5 51 - -
Ahy17g2787 1824 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 834 1822 IPR000185 GO:0005524|GO:0006605|GO:0006886
Ahy17g2787 1824 SMART ring_2 6 50 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2787 Ahy-Chr17 126384225 126402909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g2787 541 767 Acyl Lipid Metabolism Gene Families AT3G18860 29.218 1.06e-11 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2787 K03070 - gmx:100793437 2845.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2787 17 126384225 126402909 Ahy17g2787 17 126384225 126402909 ECH
Ahy17g2787 17 126384225 126402909 Ahy8g0508 8 10137222 10141130 hybridization