Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2729 ATGGCTAACAATGCTGCTACGTGTGCTGAGAGGGCAACAAGTGACATGCTTATTGGTCCTGATTGGGCAATTAACATTGAGTTGTGTGATATCATCAATATGGACCCTAAGCAAGCAAAGGATGCGTTAAAGATACTTAAGAAGCGTTTGGGCAATAAAAGTCCTAAGATACAACTTCTGGCACTTTTTGCACTGGAGACCCTTAGTAAAAATTGTGGTGAAAGCGTGTTTCAGCAGATTGTTGAGCGGGACATCTTACATGATATGGTTAAGATAGTGAAGAAGAAGCCTGACTTAAATGTGAGGGAAAAGATACTGATTTTGATTGATACATGGCAAGAAGCTTTTGGGGGCCCAACCGGTGTTTACCCCCAATACTATGCAGCATATAATGAATTAAAGGCTGCTGGAGTTGAATTTCCACCACGAGCAGAGAGCAGTGTGCCATTTTTCACTCCTCCTCAAACCCAGCCAGTTGTTCATTCAGCTGTAGAATATGATGATGATGCTGCTATTCAGGCTTCTCTTCATTCGGATGAATCTGGCCTTAGTGTGCCAGAGATTCAAAATGCTCAAGGACTAGCTGATGTTTTGATGGAAATGCTGAATGCCCTGAATCCTAAAGATCCCAAGAGCGTGAAAGATGAATTCATTGTTGACCTTGTGGACCAGTGCCGATCTTATCAAAAGCGTGTGATGCTTCTTGTGAACAATACTGCGGATGAGCAGCTTTTAATTCAGGGATTGGCACTGAATGACAGCCTTCAGCGAGTACTCCTCAAACACGACAATATTGCGAACGGAACTGTCGATACAGGTGCAAGAGCAACAGAAACTCCAGCTCTGCCACTTGTAAATGTAAATCACGAGGATGATGATGAGTCAGAGGATGATTTTGCTCAACTAGCCCATAGGTCATCACGCGATACTAATGCACAGAACCGGAAACCAGCCTACGACAAGGCAGAACCAGGGAGGTTTAACTCATTTCTTCCTCCACCACCACCATCAAAGAATCCGGTCTACTCTGACACAGGCATGGTTGACTATCTCAGTGGTGATGCATATAAAGCAGAGGGAGGATCCTCTGAAAACTCAAAGCAGACTCCGTTGGCAGCTCCGACTAATCCCACCGCATCAACTATTCCTGCACGGTCCTCTTCACCTCCTACTCATGCCAGGAGTACTTCACCAATTGTCAGTGGCCAGCCTGTGTATGATGAGCCATCTCCCACAAAAAAGTATTCAGAAGATCTGCCTCCAGCTCAATGGGACAGGGACACACCATCTACTGGGTTCCTTCCACCGCCACCTGCGAAGCACAACCAGAGACAACAATTTTTTGAGCAACAAAGTGGAACAACTTATTCAAGTGGTGGATCCAGTTCCTCTTATGATGGTTTGGTTGGGCAAACTCAGAATCTGTCTCTAAATCCATCCACCCCAACCAAACAACAGAAGCCAGAAGATGTCCTGTTCAAAGATTTGGTTGATTTTGCCAAATCCAAAACCTCTTCATCTTCCAAACCAAATAATAGGTCATATTGA 1548 0.447 MANNAATCAERATSDMLIGPDWAINIELCDIINMDPKQAKDALKILKKRLGNKSPKIQLLALFALETLSKNCGESVFQQIVERDILHDMVKIVKKKPDLNVREKILILIDTWQEAFGGPTGVYPQYYAAYNELKAAGVEFPPRAESSVPFFTPPQTQPVVHSAVEYDDDAAIQASLHSDESGLSVPEIQNAQGLADVLMEMLNALNPKDPKSVKDEFIVDLVDQCRSYQKRVMLLVNNTADEQLLIQGLALNDSLQRVLLKHDNIANGTVDTGARATETPALPLVNVNHEDDDESEDDFAQLAHRSSRDTNAQNRKPAYDKAEPGRFNSFLPPPPPSKNPVYSDTGMVDYLSGDAYKAEGGSSENSKQTPLAAPTNPTASTIPARSSSPPTHARSTSPIVSGQPVYDEPSPTKKYSEDLPPAQWDRDTPSTGFLPPPPAKHNQRQQFFEQQSGTTYSSGGSSSSYDGLVGQTQNLSLNPSTPTKQQKPEDVLFKDLVDFAKSKTSSSSKPNNRSY* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2729 515 MobiDBLite consensus disorder prediction 359 403 - -
Ahy17g2729 515 Pfam GAT domain 194 267 IPR004152 GO:0035091|GO:0043130
Ahy17g2729 515 MobiDBLite consensus disorder prediction 304 322 - -
Ahy17g2729 515 PIRSF TOM1 1 515 IPR014645 -
Ahy17g2729 515 PANTHER TOM1-LIKE PROTEIN 1 514 IPR044836 GO:0035091|GO:0043130|GO:0043328
Ahy17g2729 515 SMART VHS_2 5 137 IPR002014 GO:0035091|GO:0043130
Ahy17g2729 515 CDD VHS 10 135 - -
Ahy17g2729 515 MobiDBLite consensus disorder prediction 443 487 - -
Ahy17g2729 515 SUPERFAMILY GAT-like domain 145 268 - -
Ahy17g2729 515 Gene3D - 2 158 IPR008942 -
Ahy17g2729 515 ProSiteProfiles VHS domain profile. 12 141 IPR002014 GO:0035091|GO:0043130
Ahy17g2729 515 PANTHER TOM1-LIKE PROTEIN 4 1 514 - -
Ahy17g2729 515 CDD GAT_GGA_like_plant 187 265 - -
Ahy17g2729 515 Pfam VHS domain 9 133 IPR002014 GO:0035091|GO:0043130
Ahy17g2729 515 SUPERFAMILY ENTH/VHS domain 7 142 IPR008942 -
Ahy17g2729 515 ProSiteProfiles GAT domain profile. 179 267 IPR004152 GO:0035091|GO:0043130
Ahy17g2729 515 MobiDBLite consensus disorder prediction 304 492 - -
Ahy17g2729 515 Gene3D - 176 273 IPR038425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2729 Ahy-Chr17 125392957 125397833 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2729 - - gmx:100792343 756.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2729 17 125392957 125397833 Ahy17g2729 17 125392957 125397833 ECH
Ahy17g2729 17 125392957 125397833 Ahy8g0473 8 9575357 9580278 hybridization
Ahy16g2845 16 142277321 142284400 Ahy17g2729 17 125392957 125397833 PCT
Ahy17g2729 17 125392957 125397833 Ahy16g2845 16 142277321 142284400 PCT