Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2724 ATGGTTGGAAAGGAGAACCTGAGAACTGAGGACTTGAACTTGTGCTTTGAGAAGCTCATGATGGTTGCTGGTGGTGGTGGTGGTGGTGGTGGTGGTGAGAAAGGAGGGAAGATGAAAGCCGGGGTGATCACTGAGTGGAAGGATATACCTGTGGAGCTTTTGATGCAGATTTTGTCCCTTGTGGATGATCAAACTGTGATCACAGCTTCTGGTGTTTGTCGTGGATGGAGAGATGCTATTTACTTTGGCCTTGCTCGTTTGTCACTCTCATGGTGTAGCAAGAACATGAATAACTTGGCTCTTTCTCTTGTTCCGAAATTCACAAAACTTCAAACTCTAATCCTTCGTCAAGACAAGCCTCAACTAGAGGATAACACAGTTGAAAGGATTGCAAATTATTGTCATGACCTGCAGATTCTGGACCTGAGTAAAAGCTTCAAACTCACCGATCGGTCGCTGTATGCCGTAGCCCACGGTTGTCCTGATCTCACTAAACTCAACATCAGTGGCTGCTCTGCTTTTAGTGACAATGCTCTGGCGTACCTTGCCGGTTTCTGCAGGAAGCTGAAAGTCCTAAACCTCTGTGGATGCGTTAGAGCAGCAACCGATACTGCGTTACAGGCTATTGGACACTACTGTAATCAGTTACAGTCTTTGAACCTTGGATGGTGTGAGAATGTTGGTGATGTTGGAGTGATGAGTTTAGCATATGGCTGTCCTGATCTAAGAATAGTGGACCTGTGTGGCTGTGTCCTTATAACAGATGATAGTGTGATTGCATTGGCAAGCAGATGCCCAAGGCTCAGGTCCCTAGGACTATACTACTGCAAGAACATAACAGATAGGGCAATGTACTCATTGGCACAGAGCAAAGTGAACAAGAGAATGTGGGGATCAGTGAAAGGAGGAGGAGGAAATGATGAAGACGGGCTTAGAACTCTCAACATAAGCCAATGCACAGCACTGACACCATCTGCAGTTCAAGCTGTTTGTGACTCATTCCCTTCACTCCACACATGCTCAGGTAGACACTCACTCATCATGAGTGGTTGCCTCAACTTGACTTCAGTTCATTGTGCTTGTGCTGTTCATGCTCACCGTGCTATCAACAATTTCCCTCACCCTGCTCATTGA 1134 0.4621 MVGKENLRTEDLNLCFEKLMMVAGGGGGGGGGEKGGKMKAGVITEWKDIPVELLMQILSLVDDQTVITASGVCRGWRDAIYFGLARLSLSWCSKNMNNLALSLVPKFTKLQTLILRQDKPQLEDNTVERIANYCHDLQILDLSKSFKLTDRSLYAVAHGCPDLTKLNISGCSAFSDNALAYLAGFCRKLKVLNLCGCVRAATDTALQAIGHYCNQLQSLNLGWCENVGDVGVMSLAYGCPDLRIVDLCGCVLITDDSVIALASRCPRLRSLGLYYCKNITDRAMYSLAQSKVNKRMWGSVKGGGGNDEDGLRTLNISQCTALTPSAVQAVCDSFPSLHTCSGRHSLIMSGCLNLTSVHCACAVHAHRAINNFPHPAH* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2724 377 PANTHER UNCHARACTERIZED 1 359 - -
Ahy17g2724 377 SUPERFAMILY F-box domain 43 81 IPR036047 GO:0005515
Ahy17g2724 377 SUPERFAMILY RNI-like 83 289 - -
Ahy17g2724 377 Pfam Leucine Rich repeat 213 236 IPR001611 GO:0005515
Ahy17g2724 377 SMART LRR_CC_2 308 333 IPR006553 -
Ahy17g2724 377 SMART LRR_CC_2 134 159 IPR006553 -
Ahy17g2724 377 SMART LRR_CC_2 213 238 IPR006553 -
Ahy17g2724 377 SMART LRR_CC_2 265 290 IPR006553 -
Ahy17g2724 377 SMART LRR_CC_2 107 133 IPR006553 -
Ahy17g2724 377 SMART LRR_CC_2 160 185 IPR006553 -
Ahy17g2724 377 SMART LRR_CC_2 186 212 IPR006553 -
Ahy17g2724 377 SMART LRR_CC_2 239 264 IPR006553 -
Ahy17g2724 377 PANTHER F-BOX SKP2A-LIKE PROTEIN 1 359 - -
Ahy17g2724 377 Gene3D Ribonuclease Inhibitor 86 301 IPR032675 -
Ahy17g2724 377 Gene3D - 43 85 - -
Ahy17g2724 377 Pfam F-box-like 47 80 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2724 Ahy-Chr17 125243088 125246536 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2724 K03875 - gmx:100797840 662.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2724 17 125243088 125246536 Ahy17g2724 17 125243088 125246536 ECH
Ahy17g2724 17 125243088 125246536 Ahy8g0470 8 9443244 9446571 hybridization