Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2698 ATGAGTCACAGAGGAATGGACGACGATGATGAGGAGGAGTACGAGGAGGACGAGCAGGTAGCCGACTTCGATGAGGAGGCAGAGGAGGAAGAGGACGATAGGGGGCGCGGCAGCGGCGGCAGGAAACGTCGGAGATCTGATTTCATCGATGATGATGCTGAGGAGGTGGATGAGGATGAGGAGGAGGAGGACGATGACGATGATTATGGGGGTGGTGGCGGCCGCAGGCGCCAGAATAGGAAAGCCTCTGCTTCTCATTTCTTCGATGACATAGCGGAGGTGGATTCAGATGGGGAAGAAGAAGAAGAGGAAGGGGAGGACGATTTCTTTGTTGATAATGGAAATGATATTCCTGAGGACAATGTCGGTAGGAGCAGACTTCATAGGCCTTTGCATGAGCAAGATGAAGATTTTGAAGCTTTAGAAAGACACATCCAGGAAAGATATGCAAGGCGTGTGGAATCTTTTGATGAAGAGGCTACAGATGTAGAACAGCAAGCTCTTTTGCCATCTGTTAGAGATCCAAAGCTGTGGATGGTGAAATGCATGATTGGTCGTGAGCGAGAGACAGCTGTTTGCCTTATGCAAAAGTATATAGATAAGGGGGCTGAATTGCAAATCAGGTCAGCTATTGCCCTTGATCATCTTAAAAACTATATTTATGTGGAAGCAGATAAAGAGGCCCACGTGAGAGAGGCTATTAAGGGTTTAAGGAACATATATGGGGTGTCAAAAATAACACTAGTTCCAATAAGAGAAATGACGGATGTGCTGTCAGTTGAAAGCAAAGCAATTGATCTTGCCAGAGATACTTGGGTCAGAATGAAGATTGGCACATATAAAGGGGACCTTGCCAAGGTAGTTGATGTTGATAATGTGAGGCAGAGGGTTACGGTGAAACTGATTCCAAGGATAGACTTGCAGGCGCTTGCAAATAAACTGGAAGGTAGAGAAGTTGTGAAAAAGAAGGCGTTTGTCCCTCCTCCTCGTTTTTTGAATGTTGATGAAGCTAGGGAACTGCATATTCGTGTCGAGCATAGACGTGATGCCTATGGGGAAAGATTTGATGCAATTGGAGGAATGATGTTTAAGGATGGATTCTTATACAAAACTGTATCAATAAAATCCATTAATGCTCAAAACATCAAACCTACTTTGAATGAACTTGAAAAATTTCGAAAACCTGGTGAGAGTGGTGACAGCGATGTAGCAAGTCTGTCAACTTTGTTCGCTAACAGAAAGAAAGGCCATTTTATGAAAGGTGATGCTGTAATCGTTGTGAAGGGTGATTTGAAGAAGTTGAAGGGGTGGGTGGAGAAAGTAGATGAAGATAATGTTCATATAAGACCAGAATTGAAGGGTCTTCCTAAAACCCTTGCTGTAAATGAAAGGGAACTTTGTAAATATTTTGAACCTGGAAACCACGTTAAGGTTGTTACTGGTGCTCAAGAGGGTGCTACCGGCATGGTTGTGAAGGTGGAACAGCATGTATTGATTCTATTATCCGACACAACAAAAGAACATATCCGTGTGTTTGCAGATGATGTTGTGGAGAGTTCTGAAGTGACCACTGGAATTACAAAAATTGGGGACTATGAACTTCGTGATCTTGTATTGTTAGATAATATGGACTTTGGTGTAATAATTCGTGTAGAAAGCGAGGCATTTCAGGTTCTTAAGGGGACTGCAGACAGGCCTGAAGTTGCACTTGTTAAATTAAGAGAGATTAAATGTAAGATAGAGAAGAAAATAAATGCGCAGGATAAGCATAAGAATACAGTCTCAGTAAAGGATGTTGTGCGAGTTGTCGAAGGTCCTTGCCATGGTGATGCCTACTCGAGATTCCCTGGCCTTAGAACTCCACCTCGTATTCCCCAGTCCCCGAGAAGGTTTTCACGAGGAGGGCCTCCAATTGATTCTGGAGGAAGGCACAGGGGTGGAAGAGGACACGATGGTTTGGCTGGTGCAACAGTCAAAGTACGCCAGGGTGCTTATAAAGGTTATCGTGGACGTGTAATAGAAGTTAAAGGCACAACAGTTCGGGTTGAATTGGAGTCCCAAATGAAGGTTGTGACGGTTGATCGCAACCATATATCGGATAATGTAGCTGTAACCCCACAGCGTGAAACTCGATATTCGATTGGATGTGAAACCCCAATGCATCCTTCTCGAACTCCCCTACATCCATATATGACCCCTATGAGAGATCCTGGAGCAACTCCTATACATGATGGAATGAGGACACCAAGGCGTGACCGGGCATGGAATCCTTATACCCCAATGAGTCCGACAAGGGACTGGGAAGATGGAAATCCAGGCTCATGGGGAACCAGCCCACAGTCCCAGGCAGGAAGCTCACCTTCACGGCTATATGAAGCCCCCACTCCTGGTGCTGGTTGGGGTAGCACTCCTGGCGGAAACTATAATGAGGCTGGAACACCGCATGACTCATATGTAAATGTTGCGAGCCCATATTTACCATCAACACCTGGTGGGCAGCCTATGACGCCAAATTCCGCGGTGTATCTTCCCAGTACCCCTGGAGGACCACCCATGACTCCAGGAACTGGTGGTCTGGACATGATGTCCCCAGTTTTAGGTGGGGACAATGAGGGGCCATGGTTTATGCCAGACATATTAGTTAATGTACACAGGCCAGGTGAAGAATCTGTTGGAGTTATAAGAGAGGTTCTTCCGGATGGGTCTTGCAAGGTAGCGCTTGGCTCAAGTGGAAATGGTGAAACGATAACTGCCCTTCCCAATGAAATGGAGGCCGTGGTGCCAAGGAAATCAGACAAAATAAAGATAATGGGTGGAGCATTGAGGGGGTCTACAGGCAAGTTGATTGGTGTAGATGGTACTGATGGTATTGTAAAGGTAGATGACACATTGGAAGTCAAGATTTTAGACCTAGTTATTTTGGCCAAATTAGCTCAACCATGA 2943 0.4553 MSHRGMDDDDEEEYEEDEQVADFDEEAEEEEDDRGRGSGGRKRRRSDFIDDDAEEVDEDEEEEDDDDDYGGGGGRRRQNRKASASHFFDDIAEVDSDGEEEEEEGEDDFFVDNGNDIPEDNVGRSRLHRPLHEQDEDFEALERHIQERYARRVESFDEEATDVEQQALLPSVRDPKLWMVKCMIGRERETAVCLMQKYIDKGAELQIRSAIALDHLKNYIYVEADKEAHVREAIKGLRNIYGVSKITLVPIREMTDVLSVESKAIDLARDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFLNVDEARELHIRVEHRRDAYGERFDAIGGMMFKDGFLYKTVSIKSINAQNIKPTLNELEKFRKPGESGDSDVASLSTLFANRKKGHFMKGDAVIVVKGDLKKLKGWVEKVDEDNVHIRPELKGLPKTLAVNERELCKYFEPGNHVKVVTGAQEGATGMVVKVEQHVLILLSDTTKEHIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNMDFGVIIRVESEAFQVLKGTADRPEVALVKLREIKCKIEKKINAQDKHKNTVSVKDVVRVVEGPCHGDAYSRFPGLRTPPRIPQSPRRFSRGGPPIDSGGRHRGGRGHDGLAGATVKVRQGAYKGYRGRVIEVKGTTVRVELESQMKVVTVDRNHISDNVAVTPQRETRYSIGCETPMHPSRTPLHPYMTPMRDPGATPIHDGMRTPRRDRAWNPYTPMSPTRDWEDGNPGSWGTSPQSQAGSSPSRLYEAPTPGAGWGSTPGGNYNEAGTPHDSYVNVASPYLPSTPGGQPMTPNSAVYLPSTPGGPPMTPGTGGLDMMSPVLGGDNEGPWFMPDILVNVHRPGEESVGVIREVLPDGSCKVALGSSGNGETITALPNEMEAVVPRKSDKIKIMGGALRGSTGKLIGVDGTDGIVKVDDTLEVKILDLVILAKLAQP* 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2698 980 SUPERFAMILY Translation proteins SH3-like domain 461 520 IPR008991 -
Ahy17g2698 980 MobiDBLite consensus disorder prediction 613 655 - -
Ahy17g2698 980 Coils Coil 146 166 - -
Ahy17g2698 980 ProSitePatterns Ribosomal protein L24 signature. 421 438 IPR005825 GO:0003735|GO:0005840|GO:0006412
Ahy17g2698 980 Pfam Spt5 transcription elongation factor, acidic N-terminal 87 170 IPR022581 -
Ahy17g2698 980 SMART kow_9 651 678 IPR005824 -
Ahy17g2698 980 SMART kow_9 417 444 IPR005824 -
Ahy17g2698 980 SMART kow_9 469 496 IPR005824 -
Ahy17g2698 980 SMART kow_9 266 293 IPR005824 -
Ahy17g2698 980 SMART kow_9 927 954 IPR005824 -
Ahy17g2698 980 MobiDBLite consensus disorder prediction 8 32 - -
Ahy17g2698 980 SMART nusgn_4 174 261 IPR006645 GO:0140673
Ahy17g2698 980 Gene3D - 472 521 IPR014722 -
Ahy17g2698 980 MobiDBLite consensus disorder prediction 33 50 - -
Ahy17g2698 980 MobiDBLite consensus disorder prediction 119 133 - -
Ahy17g2698 980 PANTHER SUPPRESSOR OF TY 5 620 978 IPR039659 GO:0006357|GO:0032784
Ahy17g2698 980 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT5 29 610 - -
Ahy17g2698 980 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT5 620 978 - -
Ahy17g2698 980 Pfam Early transcription elongation factor of RNA pol II, NGN section 176 258 IPR005100 -
Ahy17g2698 980 Pfam KOW motif 472 497 IPR005824 -
Ahy17g2698 980 MobiDBLite consensus disorder prediction 51 68 - -
Ahy17g2698 980 CDD KOW_Spt5_2 418 468 IPR041975 -
Ahy17g2698 980 MobiDBLite consensus disorder prediction 771 789 - -
Ahy17g2698 980 Gene3D - 412 469 IPR014722 -
Ahy17g2698 980 MobiDBLite consensus disorder prediction 740 815 - -
Ahy17g2698 980 CDD KOW_Spt5_5 653 699 IPR041978 -
Ahy17g2698 980 CDD NGN_Euk 176 259 IPR039385 -
Ahy17g2698 980 MobiDBLite consensus disorder prediction 1 133 - -
Ahy17g2698 980 Gene3D - 638 701 IPR014722 -
Ahy17g2698 980 PIRSF Spt5 610 980 IPR017071 GO:0006357|GO:0032784
Ahy17g2698 980 PIRSF Spt5 2 612 IPR017071 GO:0006357|GO:0032784
Ahy17g2698 980 Gene3D - 156 259 IPR036735 GO:0006355
Ahy17g2698 980 PANTHER SUPPRESSOR OF TY 5 29 610 IPR039659 GO:0006357|GO:0032784
Ahy17g2698 980 CDD KOW_Spt5_6 921 978 IPR041980 -
Ahy17g2698 980 Gene3D - 266 308 IPR014722 -
Ahy17g2698 980 CDD KOW_Spt5_1 270 307 IPR041973 -
Ahy17g2698 980 CDD KOW_Spt5_3 469 519 IPR041976 -
Ahy17g2698 980 MobiDBLite consensus disorder prediction 93 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2698 Ahy-Chr17 124555281 124563092 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2698 K15172 - gmx:100801380 1521.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2698 17 124555281 124563092 Ahy17g2698 17 124555281 124563092 ECH
Ahy17g2698 17 124555281 124563092 Ahy8g0449 8 9026909 9034584 hybridization