Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2567 ATGCCAACACCAGCTTTCACTTTCTACTCTACAATGTCAGCTTCAGCTTCGTTTCTTGCTCCGTCCCCCTCTTTCGCTCCATTCAGGGGTAGCAAAGAGGTTCCACGTATGTTTTCAGTGTCTGACCTGAAAAGCATAGCATGCAACAAAAAGGAGAATCGCACTTCAAAGCTTTACATTATACCCATCACCACTGTTACTCGCTTTTGTGCCTCAAGAGCTTCACTTGAGTCCTTGCACTTTGCTGACACTAATGCTAATCAAAATCACAGAATAAACGAATTTGAGACAGAGTTGAACGAGTTCTTTGATGAAGTGAAAACAATGATTAGAATGGGAAAAAGAGATGATGCTCTTGACCTACTTAATGCAAATTATGAAGTGGTCAAAGATCGGATGAATGCCGGCTCTAAAGGCATTCAAGAAGCTGCAATTCTGGATGTCTTAGCGCTGGGTTATGTGGCTGTTGGAGACCTAAAAACTGTTGCTTTTTTGTTGAATGTGATGAGAAAAGTGATTGACAATTTGAAAGATGACACACCACATCTAGATTTGATACTTATGCATATGGGAAGTATGTATTCAACATTGAGCAAGTTTGGAAAATCACTGGACACATATCAAAGGGCTTTCAACATTATGGAAAGGACCTATGGTAAGGACAGCCCTTTTCTTGTCACACCCTATTTGGCTATGGCAAAGGTTCTTGGTTCAACTGGAAAAGCAACAAAAGCCATAGAGAAATACCAGTCTGCAATAACTATTTTGGAGTCTAAGAGAGGTGCTGAAAGTAAGGATTTGGTTGTACCTTTACTTGGTCTTGGCAATCTTTTACTGAAAGAAAGAAGAGTCAACGACGCAGAAACTCATTTTACTAGGGTTCTCGACATATACACAAAGTCATATGGACAAAATGATGGAAGAATTGGATTGGCCATGAGTTCCCTAGCCCAAGTTAAGTGTGCTCAAGGGAAGTCAGATGAAGCAATCAATTTGTATGAACATGCACTTCATGTCATGAAAGATTCCAATTACTTGTCGGCAGATGACAGCATCATGGAAAAGATGAGGGTAGATCTTGCTGAGTTGCTTCATGCTGTCGGGAGAGCACAAGAAGGCAGAGAATTATTAGAGGAATGCTTATTAATCACAGAGAGGCACAAAGGAAAAGGTCACCCCGGCTTAGTGACACACATGATAAATCTTGCAACTTCATATTCCCGATCGAAGAATTATGCAGAGGCCGAGCACTTGTTGAGAAGAAGTTTGGAAATAATGATAAAGCAGAAAGGAAGCGATGACCAGTCCGTCAGCTTTCCAATGTTGCAACTTGCAGTTACGCTTTACCACTTGAAACAAGATGAAGAAGCTGAGAAACTGGCACTGGATGCTTTGCGCATCCGTGAGAAGGCATTTGGAGAAGATTCTCTTCCAGTTGATAAAGGACAAGAAACACAGAGAAGTGGAAAATGA 1473 0.4114 MPTPAFTFYSTMSASASFLAPSPSFAPFRGSKEVPRMFSVSDLKSIACNKKENRTSKLYIIPITTVTRFCASRASLESLHFADTNANQNHRINEFETELNEFFDEVKTMIRMGKRDDALDLLNANYEVVKDRMNAGSKGIQEAAILDVLALGYVAVGDLKTVAFLLNVMRKVIDNLKDDTPHLDLILMHMGSMYSTLSKFGKSLDTYQRAFNIMERTYGKDSPFLVTPYLAMAKVLGSTGKATKAIEKYQSAITILESKRGAESKDLVVPLLGLGNLLLKERRVNDAETHFTRVLDIYTKSYGQNDGRIGLAMSSLAQVKCAQGKSDEAINLYEHALHVMKDSNYLSADDSIMEKMRVDLAELLHAVGRAQEGRELLEECLLITERHKGKGHPGLVTHMINLATSYSRSKNYAEAEHLLRRSLEIMIKQKGSDDQSVSFPMLQLAVTLYHLKQDEEAEKLALDALRIREKAFGEDSLPVDKGQETQRSGK* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2567 490 Pfam Tetratricopeptide repeat 355 426 - -
Ahy17g2567 490 Pfam Tetratricopeptide repeat 186 258 - -
Ahy17g2567 490 Pfam Tetratricopeptide repeat 272 339 - -
Ahy17g2567 490 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) 93 478 - -
Ahy17g2567 490 Coils Coil 85 105 - -
Ahy17g2567 490 SUPERFAMILY TPR-like 186 425 IPR011990 GO:0005515
Ahy17g2567 490 Gene3D Tetratricopeptide repeat domain 151 356 IPR011990 GO:0005515
Ahy17g2567 490 Pfam Tetratricopeptide repeat 442 476 - -
Ahy17g2567 490 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) 93 478 - -
Ahy17g2567 490 Gene3D Tetratricopeptide repeat domain 357 481 IPR011990 GO:0005515
Ahy17g2567 490 SMART tpr_5 226 259 IPR019734 GO:0005515
Ahy17g2567 490 SMART tpr_5 438 471 IPR019734 GO:0005515
Ahy17g2567 490 SMART tpr_5 396 429 IPR019734 GO:0005515
Ahy17g2567 490 SMART tpr_5 310 343 IPR019734 GO:0005515
Ahy17g2567 490 SMART tpr_5 184 217 IPR019734 GO:0005515
Ahy17g2567 490 SMART tpr_5 268 301 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2567 Ahy-Chr17 121324827 121328801 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2567 - - aprc:113852595 659.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2567 17 121324827 121328801 Ahy17g2567 17 121324827 121328801 ECH
Ahy17g2567 17 121324827 121328801 Ahy8g0356 8 7366214 7369914 hybridization