Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g1418 ATGGAAACCAATCAGTTACCTTGCAAGTCAAGCTTCTCTCTGCTCTTATTTTTCCTACTTACTATCATTGCTTTCCATGCTACAAATGCAGAGCATCAATACCATGAATTTGTTATCCAAAGAACACCAGTGAAGAGGCTGTGCAAGACACAAAGCATACTCACTGTAAATGGACAGTTTCCAGGCCCAGCAATTGAAGTAAGAGATGGTGATTCACTTGCAATCAAAGTAGTCAATGCTGGACCTTACAATATCTCTATCCACTGGCATGGATTGAGGATGCTGAGAAATCCATGGGCAGATGGACCAAGCTATGTGACTCAATGTCCTATCCAACCTGGGGGAAGTTACACATACCGTTTTACAATACAAAACCAAGAGGGAACCCTTTGGTGGCATGCTCACACTGGCTTCCTACGAGCCACTGTTTATGGTGCTTTCATTATCTACCCGAAACAGGCTTCTTCCTATCCATTCACTCGGCCAAAGAGAGAATTTCCCATCCTTCTTGGGGAATGGTTTGATAGGGATCCTATGGCTCTCTTAAGGCAGACACAGTTAACAGGAGCTGCTCCAAACGTGTCTGTTGCTTACACCATCAACGGTCAACCCGGAGATCTCTACAGATGTTCTAGTCAAGAAACCGTGCGTGTTCCGGTAGATGTAGGCGAGACGATTCTGCTAAGAATCATCAACAGTGCCCTGAACCAAGAACTCTTCTTCTCAATAGCTAATCATAGAATGACAGTTGTCGGCACAGACGCGGCATATACGAAGCCTTTCAACACCGGAGTCATCATGATAGGACCCGGCCAGACAATCAACGTCCTCGACACGGCCAACCAGCCTCCCGGCCGCTACTACATGGCGGCGCGCGCATACCAAACAGCCATGAACGCCGCCTTCGACAACACTACCACCACCGCCATCCTCAAATACAAATCCGCCAGCTGCAGCAGAAAAGGACCAGCACCGCGGCCAATTCTTCCCGCATTGCCAGCTTTCAACGACACCGCCACCGCCACCGCATACACGTCGGGAATCAGAGGAATGTCAAAGATTAACGTCTTCACAGACGCTGCTGATGCGAATTTGTTCTTCACAGTTGGATTAGGCCTAATTAATTGTACAAATCCTAATAGTCCCCGGTGCCAGGGACCAAACGGAACGCGATTCACAGCAAGCATTAACAATAATTCTTTTGTTCTTCCAAGGACAACCTCCTTAATGCAGGCTTACTACCAAGGAATACCCGGCGTGTTCACGACGGATTTTCCTCCTGTGCCGCCGCAGCAATTCAATTACTCCGGCAACGTTCCGCGGGGCCTGTGGACGCCTACGCCGGGAACTAGGCTCCTGAAGTTGAAGTATGGGACACGGGTGCAACTTGTGTTCCAAGATACAAATATTGTTACTACAGAGGACCACCCCATGCACATTCATGGCTTCCATTTCTTTGTGGTTGGATCTGGTTTTGGAAACTTTAACCCTTCGACGGATCCTGCAAGGTTTAACCTGGTTGATCCGCCCGTCAAGAACACCATTGGAACGCCTCCTGGAGGATGGGTGGCCATTCGATTCGTCGCCGATAATCCAGGAATTTGGTTCTTGCACTGTCACATAGACTCACATCTGAATTGGGGACTGGCAACTGCACTTTTGGTAGAGAATGGAGTTGGCCCATCACAATCAGTGATTCCACCACCACCTGATCTACCTCAATGTTAA 1728 0.4844 METNQLPCKSSFSLLLFFLLTIIAFHATNAEHQYHEFVIQRTPVKRLCKTQSILTVNGQFPGPAIEVRDGDSLAIKVVNAGPYNISIHWHGLRMLRNPWADGPSYVTQCPIQPGGSYTYRFTIQNQEGTLWWHAHTGFLRATVYGAFIIYPKQASSYPFTRPKREFPILLGEWFDRDPMALLRQTQLTGAAPNVSVAYTINGQPGDLYRCSSQETVRVPVDVGETILLRIINSALNQELFFSIANHRMTVVGTDAAYTKPFNTGVIMIGPGQTINVLDTANQPPGRYYMAARAYQTAMNAAFDNTTTTAILKYKSASCSRKGPAPRPILPALPAFNDTATATAYTSGIRGMSKINVFTDAADANLFFTVGLGLINCTNPNSPRCQGPNGTRFTASINNNSFVLPRTTSLMQAYYQGIPGVFTTDFPPVPPQQFNYSGNVPRGLWTPTPGTRLLKLKYGTRVQLVFQDTNIVTTEDHPMHIHGFHFFVVGSGFGNFNPSTDPARFNLVDPPVKNTIGTPPGGWVAIRFVADNPGIWFLHCHIDSHLNWGLATALLVENGVGPSQSVIPPPPDLPQC* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g1418 575 ProSitePatterns Multicopper oxidases signature 1. 533 553 IPR033138 -
Ahy17g1418 575 CDD CuRO_2_LCC_plant 166 313 IPR034285 -
Ahy17g1418 575 CDD CuRO_1_LCC_plant 35 151 IPR034288 GO:0005507
Ahy17g1418 575 CDD CuRO_3_LCC_plant 420 558 IPR034289 GO:0005507
Ahy17g1418 575 Pfam Multicopper oxidase 425 557 IPR011706 GO:0005507|GO:0016491
Ahy17g1418 575 SUPERFAMILY Cupredoxins 159 351 IPR008972 -
Ahy17g1418 575 TIGRFAM laccase: laccase 31 575 IPR017761 GO:0046274|GO:0048046|GO:0052716
Ahy17g1418 575 SUPERFAMILY Cupredoxins 34 178 IPR008972 -
Ahy17g1418 575 Gene3D - 33 162 IPR008972 -
Ahy17g1418 575 Pfam Multicopper oxidase 165 315 IPR001117 -
Ahy17g1418 575 Gene3D - 382 575 IPR008972 -
Ahy17g1418 575 SUPERFAMILY Cupredoxins 362 575 IPR008972 -
Ahy17g1418 575 PANTHER MULTI-COPPER OXIDASE 9 575 IPR045087 -
Ahy17g1418 575 ProSitePatterns Multicopper oxidases signature 2. 538 549 IPR002355 GO:0005507
Ahy17g1418 575 Gene3D - 163 353 IPR008972 -
Ahy17g1418 575 Pfam Multicopper oxidase 39 153 IPR011707 GO:0005507
Ahy17g1418 575 PANTHER LACCASE-13 9 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g1418 Ahy-Chr17 25332263 25336600 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g1418 K05909 - gmx:100786719 1009.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g1418 17 25332263 25336600 Ahy20g1316 20 27334679 27339907 ECH
Ahy17g1418 17 25332263 25336600 Ahy17g1418 17 25332263 25336600 ECH
Ahy17g1418 17 25332263 25336600 Ahy7g1168 7 20477560 20481688 hybridization
Ahy17g1418 17 25332263 25336600 Ahy17g1418 17 25332263 25336600 PCT
Ahy17g1418 17 25332263 25336600 Ahy7g1168 7 20477560 20481688 PCT
Ahy7g1168 7 20477560 20481688 Ahy17g1418 17 25332263 25336600 PCT