Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g1273 ATGGGAGATAATCAGAGAATCCACCCTCTTCATCATGATGTTGAATCACCACCATCGCCGCCACCGCCACAACCATTGGCACCTTTGGTGCCAAGGAACATGTCCAGATCGGATAAAGGCGATCCGGAGTTGTCAAATCAACAACCACCACCACCTCCTCCTCCTCCTGCTCGCAACAGAAGATCAAGAAGAGGTTGCTGCTGCAAATTCCTATGTTGGTTTATAAGCATATTGCTTATCGTGGTGGTGGCGATCGGCGCAACAGTGGGTATACTTTATCTTGTGTTCAGGCCGAAGCTTCCGAAATACTCCATCAACGAAATTGGGGTGACAAGATTCGATCTTTCAAACAACGATAGCTTAAGTGTCACATTCAACTTGACAATAACAGCTCGGAATCCAAACAAGAGAATTGGAATCGATTACAGAGGTGGAAGCCACATTAGTGCTTATTACAATGGCACAAAACTATGTGATGGATCGTTACCGAAATTCTACCAAGGTCACCATAACACTACAGTTCTTAACATTCCTCTTTCAGGGGAAGCAGAAAATGCAACAGCTTTGGAGAATTCATTGACGCAACAACTGCAGCAAAGTGGAAGTGTTCCTCTTCGGTTGAAGGCCAAGCAACCGGTGAGGATTAAGTTTGGGAAGTTGAAGCTATTCAAGATCACCTTCAGGGTTAGGTGCTGGATTGTTGTGGATAATCTTAATGCTAATAACTCTATTAGAATCAAGAGCAGTAGCTGCAAGTTCAGGCTCAAGTTATAG 774 0.4432 MGDNQRIHPLHHDVESPPSPPPPQPLAPLVPRNMSRSDKGDPELSNQQPPPPPPPPARNRRSRRGCCCKFLCWFISILLIVVVAIGATVGILYLVFRPKLPKYSINEIGVTRFDLSNNDSLSVTFNLTITARNPNKRIGIDYRGGSHISAYYNGTKLCDGSLPKFYQGHHNTTVLNIPLSGEAENATALENSLTQQLQQSGSVPLRLKAKQPVRIKFGKLKLFKITFRVRCWIVVDNLNANNSIRIKSSSCKFRLKL* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g1273 257 MobiDBLite consensus disorder prediction 14 29 - -
Ahy17g1273 257 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 56 255 - -
Ahy17g1273 257 Pfam Late embryogenesis abundant protein 128 231 IPR004864 -
Ahy17g1273 257 Gene3D - 94 230 - -
Ahy17g1273 257 PANTHER EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN, PUTATIVE-RELATED 56 255 - -
Ahy17g1273 257 MobiDBLite consensus disorder prediction 45 59 - -
Ahy17g1273 257 SUPERFAMILY LEA14-like 98 218 - -
Ahy17g1273 257 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g1273 Ahy-Chr17 19781778 19783047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g1273 51 257 EF-hand Containing Proteins AT5G21130 30.660 4.20e-33 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g1273 - - gmx:100778798 344.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g1273 17 19781778 19783047 Ahy17g1273 17 19781778 19783047 ECH
Ahy17g1273 17 19781778 19783047 Ahy7g1042 7 15655304 15656447 hybridization
Ahy17g1273 17 19781778 19783047 Ahy17g1273 17 19781778 19783047 PCT
Ahy17g1273 17 19781778 19783047 Ahy7g1042 7 15655304 15656447 PCT
Ahy7g1042 7 15655304 15656447 Ahy17g1273 17 19781778 19783047 PCT