Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g0340 ATGTTCGTCTACAAGGTTCTATACCGTGTTTCCAGAACCATTTCCCGAAGCTCCACGCTTCTCTCTGCTTCGCAAAGGCACCCCCAACACTTGTCAACCTTCTCCAATCACTTCCATTCCCTCCTTCCCCAATCGCAAACCAAGCTGATTCAGGTTCAAGCCAATTTGTTATATCCACCAATAAATCCTTCTCTGGCTCCAAGATTTGGATTTTCTTCATCAGCATCACCTGACGAAAAGGAAAAGGCAAATAATGTGGGAGATTCTACAAATGATGACCCTGCCAAAACAAGTGTGGATGAGAAGGAAATTGATCAGGGTGAACAAGCCAAAGGTGCTGATCAAAGAGAAGAATCAGATTCTGATATAGAGAGTGAAGATCTATCAAGGGATGATTTAATTAAGCTTGTTGCTGAGAAGGAAGAACTTTTGAATTTGAAGCACAAAGAGATTGAGAAAATGCAGGATAAAGTTCTGCGTACTTATGCAGAGATGGAGAATGTCATGGACAGAACTAGACGTGAATCAGAGAATTCAAAAAAATTTGCCATACAGAATTTCGCAAAGAGCTTACTAGATGTTGCGGACAACTTGGGAAGAGCTTCCTCTGTTGTAAAGGAAAGCTTTTCAAAGATTGATGCATCAAATGACACCTCCGAATCCGTAAAACTCTTGAAAACACTTTTGGAAGGTGTTGAAATGACCGACAAGCAACTTTCAGAGGTACTTAAAAAGTTTGGTGTTGAAAAGTTCGATCCTACAAATGAGCCCTTTGATCCGAATATGCACAATGCCATCTTCCAAGTTCCTGACAGCTCCAAGCCTCCAGGCACCGTTGCTGCTGTTCTCAAGGCAGGATATAAGCTTTATGATCGCGTTATTCGCCCGGCCGAAGTTGGTGTAACCCAAGCTGTGGAGGAGGATAAGAATGCAGCTGAATGA 942 0.4246 MFVYKVLYRVSRTISRSSTLLSASQRHPQHLSTFSNHFHSLLPQSQTKLIQVQANLLYPPINPSLAPRFGFSSSASPDEKEKANNVGDSTNDDPAKTSVDEKEIDQGEQAKGADQREESDSDIESEDLSRDDLIKLVAEKEELLNLKHKEIEKMQDKVLRTYAEMENVMDRTRRESENSKKFAIQNFAKSLLDVADNLGRASSVVKESFSKIDASNDTSESVKLLKTLLEGVEMTDKQLSEVLKKFGVEKFDPTNEPFDPNMHNAIFQVPDSSKPPGTVAAVLKAGYKLYDRVIRPAEVGVTQAVEEDKNAAE* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g0340 313 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 139 247 IPR013805 -
Ahy17g0340 313 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 248 303 IPR009012 GO:0006457
Ahy17g0340 313 Pfam GrpE 137 302 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ahy17g0340 313 Gene3D - 131 246 IPR013805 -
Ahy17g0340 313 PANTHER GRPE PROTEIN HOMOLOG 1 305 - -
Ahy17g0340 313 PRINTS GrpE protein signature 282 301 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ahy17g0340 313 PRINTS GrpE protein signature 255 270 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ahy17g0340 313 PRINTS GrpE protein signature 159 175 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ahy17g0340 313 MobiDBLite consensus disorder prediction 69 127 - -
Ahy17g0340 313 Gene3D Head domain of nucleotide exchange factor GrpE 247 302 IPR009012 GO:0006457
Ahy17g0340 313 PANTHER GRPE PROTEIN 1 305 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ahy17g0340 313 Hamap Protein GrpE [grpE]. 100 303 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ahy17g0340 313 ProSitePatterns grpE protein signature. 258 301 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ahy17g0340 313 CDD GrpE 152 301 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ahy17g0340 313 Coils Coil 137 157 - -
Ahy17g0340 313 MobiDBLite consensus disorder prediction 94 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g0340 Ahy-Chr17 3106212 3109198 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g0340 K03687 - gmx:100803396 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g0340 17 3106212 3109198 Ahy17g0340 17 3106212 3109198 ECH
Ahy17g0340 17 3106212 3109198 Ahy7g0229 7 1766524 1769523 hybridization