Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3365 ATGAATCCGCCCACGATAGACTTCAAGGTGGATCTCAATTCAGAGAGGGTTGAAGAAGAGAAAATGGAAGGGGGTTCTATGCTTTATTGTGATCTTTGTGATACAGAAGTAGTTTACAAGTTGGCGCAAATGTTGCTTCCAGGGCTAGCAACTTCCTGTGTTGATAGCACAGCTGGGAGCTTCAAGACTCCTGGTTCAGTGGCTGTTGATTTGAGAAAGGAAATGATAATCTATATTACGCAGAGAAGCGAAACGTTTGTCGCTGAGTCTATTGTCTTGGATGGTGGTCCTAATGGTGAAGAATCGGATCATCCTTTTGATATCATTTCTAACTTCGTTGATGACTTTGCTATTTCAAAGAGGAATTTATTTACCCGGGTTTCTGGATTGCTACTCACTGATATGAGAGAAGACAAGATTGATGACTTCATGCAGGAGATGGAACTGACTGGTTTTTGGCCACTGGAAAGAAGAGAAACGATTGCAGAGGCGATTCTAAAGAATGTTGACATCAAGAATGAATTTCATTGCGCCATGAAGTTCAGATCTGTAGATGATCTCGCTGTTCATGCTTACCATTGTAACTTCAGACCTCTATTCTGTGAAAACGAGGGATGCAATGCAAGGTTAATTGCAAAACATTTGGAAAAGCATGACTCAATTTGTCCTTTCAAGATAATTCCATGTGAGCAGAAGTGTTCAGATAGCATTATGAGGCGTGCAATGGACAGACACTGTATCACTGTTTGTCCGATGAAGCTTGTAGATTGTCCATTTCATTCGTTAGGTTGTCGATCTGCTATAGCACAATGTGTGATCGAAAAGCACTGCGCAGATGATGTTCGTTCTCACTTGTGGCACTTGCTTAAAGGCATGTACAAGCAAGCATCTGGGGAAGATCTTCAAAGACGGGTACAGCAAATTATACAGGCATCACCAGGCAGCAGGTTAGCAGAGGCCCGGGATGTGAGATCTCTAAACTTTGTTGTCAAGGATATTGAAGCTAAGCTAGGGCCGTTTGAGTTGGGTTCTGTGAAGAAAAATAGCACAGAGACTCTCGCCAAAAACAACGGTGGGAAAAATGTTGCCACCAATGCAAATGGCAGTGAAGAAAGCACAAAGACTCCAGATTTGGTAAATTCATCACATAAAGCTGAAGTCAGTGCTGAGAAGAAAAATAGTGCAGAGACTGTCGCTAATAACAACATTGGGGGAAATAGTGTTGCCAATGCAAACGGCAGTGGAGAGAGCACAAAGGCTCTGGATATGGTAAATTCATCAAATAAAGCTGAACGGAGTCTTGAGAAGAAAAATAGCGCAGAGACTGTCGCCGAAAACGACGATGGGAGAAGTAGTGTTACCAATACAAATGGCAGTGAAGAGAGCACAAATGCTCGACATATGGTAAATTTATATACAACTGAAGTGAGTGCTGAGAAAAAAGATAGCTTAGATATTACAACCTATGAGAAGGGCAGTGAAGAGAGCACAGAGGCTTTAGATATGGTAGATTTACTAGATAACGTTGAAGCGCATGGTATCATCCATATGGATAGTTCAGAGAATACTGAGAACAAAGATGGCGAACATAGTCACATTGAAAGCAGGAAGAGCAACGAGAGGGAAACGATTCACATTGAAAGCAAGAGCAACGAAGTTGATAAACAGAATCCAATTATGGCTAGTTTATCAAATGAAGATGAAACTAGCCTTATGAACATGGACGGTGTGCAGATGTACATCAAAACCAAAGATGGTGAAGGTAATGGTGAACATAAATTCAAGGGCAATGAAGAGAGCACCCAGACAAATATGAAAAATTTATCAGACAAAGGAGAAATTAGTGCCGCAAATGAGGACAGTGCAGAGAATAGCACTGTAAATAAACATATTGAATCTAATAGCTTTGAAGATGAAGATAATGAACAAAGGATACAGAATCCAAAAATGGAAACTAACGGTAATGCACAGCACAATGTTAACAACAAAGATATCGACAATGAAGATTTAGAAGAAAAACTACAACTTCAAGCTTCAAAAGTGCAACATTTATCAGATAAAGCTCATGTCATGGATGATAAAGGATATGCTATGGAGAGTGATGTCAGTGAAAGGCAGATATACAACCAATCAAGTTCATTAGACTAG 2148 0.4036 MNPPTIDFKVDLNSERVEEEKMEGGSMLYCDLCDTEVVYKLAQMLLPGLATSCVDSTAGSFKTPGSVAVDLRKEMIIYITQRSETFVAESIVLDGGPNGEESDHPFDIISNFVDDFAISKRNLFTRVSGLLLTDMREDKIDDFMQEMELTGFWPLERRETIAEAILKNVDIKNEFHCAMKFRSVDDLAVHAYHCNFRPLFCENEGCNARLIAKHLEKHDSICPFKIIPCEQKCSDSIMRRAMDRHCITVCPMKLVDCPFHSLGCRSAIAQCVIEKHCADDVRSHLWHLLKGMYKQASGEDLQRRVQQIIQASPGSRLAEARDVRSLNFVVKDIEAKLGPFELGSVKKNSTETLAKNNGGKNVATNANGSEESTKTPDLVNSSHKAEVSAEKKNSAETVANNNIGGNSVANANGSGESTKALDMVNSSNKAERSLEKKNSAETVAENDDGRSSVTNTNGSEESTNARHMVNLYTTEVSAEKKDSLDITTYEKGSEESTEALDMVDLLDNVEAHGIIHMDSSENTENKDGEHSHIESRKSNERETIHIESKSNEVDKQNPIMASLSNEDETSLMNMDGVQMYIKTKDGEGNGEHKFKGNEESTQTNMKNLSDKGEISAANEDSAENSTVNKHIESNSFEDEDNEQRIQNPKMETNGNAQHNVNNKDIDNEDLEEKLQLQASKVQHLSDKAHVMDDKGYAMESDVSERQIYNQSSSLD* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3365 715 MobiDBLite consensus disorder prediction 517 552 - -
Ahy16g3365 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 218 282 IPR013083 -
Ahy16g3365 715 MobiDBLite consensus disorder prediction 393 428 - -
Ahy16g3365 715 MobiDBLite consensus disorder prediction 632 646 - -
Ahy16g3365 715 MobiDBLite consensus disorder prediction 445 466 - -
Ahy16g3365 715 MobiDBLite consensus disorder prediction 351 466 - -
Ahy16g3365 715 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 1 659 IPR043211 -
Ahy16g3365 715 MobiDBLite consensus disorder prediction 585 599 - -
Ahy16g3365 715 ProSiteProfiles Zinc finger TRAF-type profile. 218 265 IPR001293 GO:0008270
Ahy16g3365 715 Pfam TRAF-type zinc finger 218 276 IPR001293 GO:0008270
Ahy16g3365 715 Coils Coil 653 687 - -
Ahy16g3365 715 MobiDBLite consensus disorder prediction 517 558 - -
Ahy16g3365 715 SUPERFAMILY TRAF domain-like 183 242 - -
Ahy16g3365 715 MobiDBLite consensus disorder prediction 351 382 - -
Ahy16g3365 715 MobiDBLite consensus disorder prediction 647 661 - -
Ahy16g3365 715 PANTHER NEUROFILAMENT HEAVY POLYPEPTIDE-LIKE 1 659 - -
Ahy16g3365 715 MobiDBLite consensus disorder prediction 429 444 - -
Ahy16g3365 715 MobiDBLite consensus disorder prediction 583 666 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3365 Ahy-Chr16 150558960 150562312 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g3365 - - ahf:112695902 1345.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3365 16 150558960 150562312 Ahy6g0794 6 10010831 10014160 hybridization
Ahy16g3365 16 150558960 150562312 Ahy2g2337 2 99554316 99557004 PCT
Ahy2g2337 2 99554316 99557004 Ahy16g3365 16 150558960 150562312 PCT