Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3328 ATGGCTGATGATTATGATTCCCCTAATATAGGGGACACAATATGTAAGGTTTTGATGCCATTCATGGCTATGATTGAAGTCTTCATGATTGCTGTCGCTAATTGTTTCAACTATCAATCAAGATGTGTTGCTAAAAATCACAAACCTTACTACAATTATGAGGATCTCGCTCGCCTTGCTCAAGAAACCAGATTGGAGGCATTGTATGTGCTGTTTAAGAGGTTAAGTAGCTCCATAATTGATGATGGTTTCATTCACAAGGAGGAACTTCAATTGGCTTTATTCCAAACAACTAATGGAGAATATCTTTTCCTAGATCGAGTATTTGACCTTTTTGACGAGAAAAGCAACGGTGTTATCGAGTTTGACGAATTTGTCCACACGCTCAGTATTTTCCATCCTTATGCTCCTCTAGAAGAAAAAATTGATTATGCATTTAAGCTTTATGATATACGGAAAAGTGGATTTATCGAGCGAGAGGAACTGAAGCAAATGGTGAAAGCCATGTTGATGGAATCTGATATGAACCTTTCCGACGATCTTCTTGAAGCTATTGTTGACAAGACAATTGCTGATGCCGATAAGGATAGGGATGGTAAAATCAGTAAAGAAGATTGGAAAGTTTTTGTGAGTAGAAATCCATCCATATTGAAGAACATGACACTTCCTTATTTGAAGGACATCACATGTATATTTCCAAGTTTTATTTTCAAATCAGAGGCTGAAATTTGA 732 0.3675 MADDYDSPNIGDTICKVLMPFMAMIEVFMIAVANCFNYQSRCVAKNHKPYYNYEDLARLAQETRLEALYVLFKRLSSSIIDDGFIHKEELQLALFQTTNGEYLFLDRVFDLFDEKSNGVIEFDEFVHTLSIFHPYAPLEEKIDYAFKLYDIRKSGFIEREELKQMVKAMLMESDMNLSDDLLEAIVDKTIADADKDRDGKISKEDWKVFVSRNPSILKNMTLPYLKDITCIFPSFIFKSEAEI* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3328 243 CDD EFh 141 211 IPR002048 GO:0005509
Ahy16g3328 243 PANTHER CALCINEURIN B 6 242 IPR045198 GO:0005509|GO:0019722|GO:0019900
Ahy16g3328 243 PRINTS Recoverin family signature 155 173 - -
Ahy16g3328 243 PRINTS Recoverin family signature 108 129 - -
Ahy16g3328 243 PRINTS Recoverin family signature 201 221 - -
Ahy16g3328 243 Pfam EF-hand domain pair 139 205 IPR002048 GO:0005509
Ahy16g3328 243 Gene3D - 59 243 - -
Ahy16g3328 243 ProSiteProfiles EF-hand calcium-binding domain profile. 137 172 IPR002048 GO:0005509
Ahy16g3328 243 SUPERFAMILY EF-hand 63 235 IPR011992 -
Ahy16g3328 243 CDD EFh 105 167 IPR002048 GO:0005509
Ahy16g3328 243 ProSiteProfiles EF-hand calcium-binding domain profile. 100 135 IPR002048 GO:0005509
Ahy16g3328 243 ProSiteProfiles EF-hand calcium-binding domain profile. 181 216 IPR002048 GO:0005509
Ahy16g3328 243 SMART efh_1 185 213 IPR002048 GO:0005509
Ahy16g3328 243 SMART efh_1 104 132 IPR002048 GO:0005509
Ahy16g3328 243 SMART efh_1 141 169 IPR002048 GO:0005509
Ahy16g3328 243 ProSitePatterns EF-hand calcium-binding domain. 194 206 IPR018247 -
Ahy16g3328 243 PANTHER CALCINEURIN B-LIKE PROTEIN 10 6 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3328 Ahy-Chr16 150232827 150239248 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g3328 65 242 EF-hand Containing Proteins AT5G24270 63.483 1.35e-79 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g3328 K06268 - nnu:104586607 325.479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3328 16 150232827 150239248 Ahy16g3328 16 150232827 150239248 ECH
Ahy16g3328 16 150232827 150239248 Ahy6g2619 6 111448696 111457304 hybridization