LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy16g2278	ATGGGTGCGAGTCGGAAGCTTCAGGGAGAGATCGATCGCGTTCTCAAGAAAGTCCAGGAAGGTGTTGAAGTCTTTGATAGTATCTGGAACAAGGTTTACGACACAGATAATGCCAACCAGAAGGAGAAGTTTGAAGCAGACCTCAAGAAGGAGATTAAGAAGCTTCAGAGGTACAGGGACCAAATTAAGACTTGGATTCAGTCCAGCGAAATCAAGGACAAGAAGGTTAGTGCATCTTATGAGCAAGCTCTAGTGGATGCCCGCAAGTTAATTGAACGTGAAATGGAAAGGTTTAAGATATGTGAAAAGGAGACAAAGACCAAAGCATTCTCTAAGGAAGGCTTAGGTCAACAGCCTAAGACTGATCCAAAAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTGGTTGGGGAGTTAGAATCTCAGATTGACAACTTTGAAGCTGAGCTTGAAGGGCTTTCTGTCAAGAAAGGAAAGAACAGGCCACCTAGATTGACACATCTAGAGACATCAATTACTCGGCACAAGGCTCATATAAAGAAATGTGAATTTATCTTGAGGCTATTAGACAATGATGAGTTAAGTCCGGAGCAGGTTAATGATGTCAAGGATTTCTTGGATGATTATGTAGAGCGTAATCAGGAGGACTTTGATGAATTCAGCGATGTTGATGAACTATACAGCTCATTGCCTTTAGATAAGGTGGAGACTCTTGAAGATCTTGTTACAATCCCCCCTGGCCTATCTAAGGCTACTCCTAGTCTCAGCTTGAAGAATACTTTGGCTGTTTCAGCATCACAATCAGCATCAGCATCTGCCTCACAAACATCTGAGCAAGCTGATGACACAGCATCCCAGGATAGCAATTCTGATATTGGTGCAAGAACTCCACCTGCGAAAGTTAGTGGAATTATTTCTGCTACTTCCACACCAGCTGGCAACCATGCTACTCCTCTTTCTGTGAATGTTTCTACGCATAATTTGTCCAGTGCACCAGCTGCTGGATCGGTCCTTTCTGGTTCGAATTCAGTTCGGAGTCCCATGGAGAATGCTAATGCTGCGAATTCACCTTCTGCGAATCAATCTTCCTCTTTGAAGGAAGAAGAGATTAATAGTTTCCCTGACCAGAGACCATCCCCATCGCTTTCTGATGCAGCACTAAGGAGCATTGGCCGAAACAACATTTCAAATCAAGCAGCAGCTAGCATCCCTCTTGGTGCTGGGAACATGGTTTCTAACAATGGAACCCTTGGTTCAGTCCCTTCAGCCTCTGAAATAACTAAGAGGAACATGTTGGCAGCTGATGATAGACTTGGTGGAAGTAGTGGGATGGTGCAGCCTCTTGTATCCCCATTAAGTAATAGCAGATTGATCTTGCCTCAGGTTGGGAAGGCTAATGAAGCTGCCTCAGCTGACTCTAATGTCATTAATGAGGCTGCAGCTGTATCTAGTAGAGTTTTTTCCCCATCTGTGGTTCCTGGCATGCAATGGAGACCTGGAAGTCCATTCCAGAACCAAAGTGATGCGATTCGTCAAAGAACTGAAATAGCTCCAGATCAAAGGGAAAAGTTTTTGCAGAAGTATCAGCAAGTGCAGCAGCAGGGGCACAGCACCCTGCTTACTATGCCTTCTCTTGGAGGAAATCCTAAGCAGTTTTCTGCCCAGCAGCAAAATCCACTTTTGCAACAGTTTAACTCCCAAGGTTCCTCTGTTTCTTCTCAATCTGCTATTGGCCTTGGAGTCCAGTCACCAGGTTTTAGTGGTATTTCAACTACTACACTACAACAGCCACCCAATTCGGTCCATTCCCCATCTAGTCAACAGTCATTGATGTCAGATGTTGGCAATTCTAAAATTGAAGATCCACAACATCAGAATTTTCCTGATGATTCAGCTGTTGAATCTACTGGTAGTACTGGGGTTGGCAAGAGTCTCATAAGTGAAGATGATTTGAAATCAACATTTGCTGCAGATTCTCCAGCAGGGGTATCCGTCTCCCTTGCAGAAACTGGTCAAACATCCAGAGATATTGATTTGTCTCCTGGCCAACCTTTACAACCCAATCAACCTACTGGTAACCTTGGTGTCATTGGGAGAAGAAATGGCATGGATCTTGGAGCCATTGGTGATAGTTTCACGGGATCAAGTTCAAGTATTAATCCAAGTGGAGTGCGTGATCAGTTATACAATTTGCAAATGCTTGAGGCAGCACACTACAAACTTCCTCTACCCAGAGACTCAGAACGTCCTAGAGCTTATACTCCTAGGCACCCAACGATAACACCTTCTAGTTATCCTCAGACACAGGCTCCTATTGTTAATAATCCTGCTTTTTGGGAGAGAGTAGGTCTTGAACCATTTGGCACTGATACATTGTTCTATGCATTTTATTATCAACAGAACACTTACCAGCAGTATTTGGCTGCAAAGGAACTAAAGAAACAGTCCTGGAGATACCACAAAAAGTATAACACATGGTTTCAGCGTCATGAAGAGCCCAAAGTTGCTACAGATGAATATGAGCAAGGAACATATGTGTACTTCGATTTCCATATTGCAAATGATGACCTTCAACATGGGTGGTGTCAAAGAATCAAAACTGAATTCACTTTTGAATATAATTATCTTGAAGACGAGCTTCTTGTATAG	2658	0.4334	MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNVVGELESQIDNFEAELEGLSVKKGKNRPPRLTHLETSITRHKAHIKKCEFILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFSDVDELYSSLPLDKVETLEDLVTIPPGLSKATPSLSLKNTLAVSASQSASASASQTSEQADDTASQDSNSDIGARTPPAKVSGIISATSTPAGNHATPLSVNVSTHNLSSAPAAGSVLSGSNSVRSPMENANAANSPSANQSSSLKEEEINSFPDQRPSPSLSDAALRSIGRNNISNQAAASIPLGAGNMVSNNGTLGSVPSASEITKRNMLAADDRLGGSSGMVQPLVSPLSNSRLILPQVGKANEAASADSNVINEAAAVSSRVFSPSVVPGMQWRPGSPFQNQSDAIRQRTEIAPDQREKFLQKYQQVQQQGHSTLLTMPSLGGNPKQFSAQQQNPLLQQFNSQGSSVSSQSAIGLGVQSPGFSGISTTTLQQPPNSVHSPSSQQSLMSDVGNSKIEDPQHQNFPDDSAVESTGSTGVGKSLISEDDLKSTFAADSPAGVSVSLAETGQTSRDIDLSPGQPLQPNQPTGNLGVIGRRNGMDLGAIGDSFTGSSSSINPSGVRDQLYNLQMLEAAHYKLPLPRDSERPRAYTPRHPTITPSSYPQTQAPIVNNPAFWERVGLEPFGTDTLFYAFYYQQNTYQQYLAAKELKKQSWRYHKKYNTWFQRHEEPKVATDEYEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELLV*	886

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy16g2278	885	Coils	Coil	41	61	-	-
	Ahy16g2278	885	MobiDBLite	consensus disorder prediction	271	298	-	-
	Ahy16g2278	885	MobiDBLite	consensus disorder prediction	591	646	-	-
	Ahy16g2278	885	PANTHER	BNAA10G16600D PROTEIN	1	885	-	-
	Ahy16g2278	885	MobiDBLite	consensus disorder prediction	334	387	-	-
	Ahy16g2278	885	MobiDBLite	consensus disorder prediction	675	698	-	-
	Ahy16g2278	885	PIRSF	NOT_su_3_5	1	885	IPR012270	GO:0006355\|GO:0030015
	Ahy16g2278	885	PANTHER	CCR4 NOT-RELATED	1	885	IPR040168	GO:0030015
	Ahy16g2278	885	MobiDBLite	consensus disorder prediction	675	702	-	-
	Ahy16g2278	885	MobiDBLite	consensus disorder prediction	271	302	-	-
	Ahy16g2278	885	Pfam	Not1 N-terminal domain, CCR4-Not complex component	4	236	IPR007207	GO:0005634\|GO:0006355
	Ahy16g2278	885	MobiDBLite	consensus disorder prediction	110	131	-	-
	Ahy16g2278	885	Pfam	NOT2 / NOT3 / NOT5 family	742	879	IPR007282	GO:0006355
	Ahy16g2278	885	Coils	Coil	132	159	-	-
	Ahy16g2278	885	MobiDBLite	consensus disorder prediction	591	647	-	-
	Ahy16g2278	885	Gene3D	-	725	880	IPR038635	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy16g2278	Ahy-Chr16	125907164	125915105	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy16g2278	K12580		-	gmx:100783415	1404.42

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy16g2278	16	125907164	125915105	Ahy16g2278	16	125907164	125915105	ECH
	Ahy16g2278	16	125907164	125915105	Ahy6g1947	6	94943718	94951800	hybridization