Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2107 ATGGTTGGGGCCGCCCCACGGTTCCTCTCTCTCCTCACCACAGCTCCCTCCCCTCTCCTCCGCCACCGCCGCCACCTCCTCCTCCTCTCCGCAAACTTCCGCCGCCTCTCCACTCCCTTTTCAACTTTCGCACCCTCTCCTCTCAAACTCAAACCGTCCCAGCACCATCACCATCCACAACCACAACAGCAGCACCAGCAGCAGCAACGCTTTCAAACCGTAGCAGCTTTCTCTCCTTCTTCTTCCGACACCTTTCCTTCCTCAGTCTCACACCCATGGCCCGAGTGGTCCCGCTTCCTCTCCCACCTCACCTCCGCCGGGTACCTCCACCGCCCGCCCCCTGACCTCGGAACCTTCGCGCCGCCCCCTGAGTTGTCGCGCCAATTCGTTGCGGAGGCTGCCGCTTGCTACGCCTTCGCCGCTGATAGACCCAACCTCTTGCGGTTGCTTTCGAAGAGAGACGTCGGGGTTGTGGTTGAAAATGGTAACCCCTTTCTGTTCCGAGATGCAAAGGAATCCATCGCAAAGATGAAAGCTTTCGTGTCAACCAATGATGCCGACGTATTGGACACTGACAGAGCAACAACAGTTGATCTAATGAAGTTTATGCTTAGTTATGCAAGTAACCCATTGGTTACATCTGAAAGCAATAATCTATCTAACAGAGATATTGTTGAATCATCTGTGAGAAATCTGTTTGGTGAACTTTACAAGCTGAGTTACAGTGCACCTGGGCCCAACTCTTCCGATTCGGTGCAAAATCAAATATCTAGTGGATATGGACAGACAATGCCTCCTGGTCGAAACATTGAAATGAAAAGGGGTGATTGGATTTGCCCAAGGTGTAATTTCATGAATTTCGCAAGAAATGTTAAATGCCGCGAGTGTGAGGAAGCAAGGCCAAAAAGACAATTGACAGGAGGAGAATGGGAATGTCCTCAGTGCGATTTCTATAATTATGGGAGGAATATGACTTGCTTAAGGTGTGATTGCAAGCGACCGGGACAGATATCTTTGGGTCCTGCCAATACCCTGTCAAATATGGGGTATGGAAATGGAGACAATACTAATACTTCAGAGATTGATAGTAGACTAGCTGCTAATGAAGAGAAAGCACGGCGTTGGTTTAGTAAGGTTTCTCAACTAGACAGCAGTGCGGATATTGACAGCTTGATTGGGGATGAAGATTTTCCCGAGATAATGCCATTAAGGAAAGGAGTAAATAGATTTGTTGTGAGCACAAGGAAAACTCCGTTGGAGAGGAGATTGGCTGACGCTCGATACAGGAGAAACTTGGACAATAATGGCATTCCCAGGGTTGAGGATTTTAAAGCTGAGGAATCAACCAGGATAAATGATCCTCCATTTTCTTCAGATCTGGCTGCCCAAAAAATTGAGAACATGACAACAGAAAAGAGCGAAACTGATGCTCAGTATGCAGATTCATCAAGCAGGGTATCTGATGAGGACTTCCCTGAAGTAATGCCTATGCGCACAGGAGAAAACCGATTTGTTGTTAGCAAGAAAAAGGATCGATCTTTGACTTCACCTGCGTACAAGAGACGATTGGCCATGGAACAATCTGGCAACAATACCAACTTTGTCCCCTTTGTTCCCTTCCCTCCAGATTACTTTGCCAAAAAGGACAAGCAACCGGAAAATGGAGTAGATTCAGTGGATATTTCTTCGACTGCTGAATCATCTTCAATATCTGAAGCGGCAGAGAATCTTCCAAAGATGCCAGATGATGCTAGAGCTAGAGCTGAGTTACGAGGCGCAAACTATTCCCCAGGTATGACCAATGCTGAAACAATGTCTGGGGTTCCAGAGATCTTCCATAATGCTACATTTGGCCGGGAAAGAAAAGAAAATGTCAGAGAGATTAGAAGACAAGATGAAAACATGAAGAACTGTAGTCCAGAACCTTCCAGACAGCACTCGACTAAAAATGATATTGGTTCCATTTCTGGGGCATTAACTAGTGGAAATTCCAGTTTCAATCAAGAGAATTCCGGGAACAAGAACAGCAATCAAGAGCCAAATTTGACAGGCAGTTTGGAAAACCAGAATAACAGAACACAGTGGACAGGAAAGAGTTTGGAGGGGTCAGCTGTCAAGGAACCAGATCCTTTGGACATGTCAGAGGAGGCAAAGGCAGAGAGGTGGTTCCGTCGTGTCGCACAGATCAAGGATATCTCTGAGCTCAGTCAGATTCCAGATGAAGATTTTCCTTCGATAATGCCTATGCGTAAAGGCGTGAATAGATTTGTTGTGAGCAAGAGGAAAACGCCGTTGGAAAGGAGATCGACATCTCAGCAGTACCGAAGAAACCTTCCTGTTGTGAGTTCAGATCCTCTTAAAAAGGAAAATGAAGGTAGCTGA 2382 0.4677 MVGAAPRFLSLLTTAPSPLLRHRRHLLLLSANFRRLSTPFSTFAPSPLKLKPSQHHHHPQPQQQHQQQQRFQTVAAFSPSSSDTFPSSVSHPWPEWSRFLSHLTSAGYLHRPPPDLGTFAPPPELSRQFVAEAAACYAFAADRPNLLRLLSKRDVGVVVENGNPFLFRDAKESIAKMKAFVSTNDADVLDTDRATTVDLMKFMLSYASNPLVTSESNNLSNRDIVESSVRNLFGELYKLSYSAPGPNSSDSVQNQISSGYGQTMPPGRNIEMKRGDWICPRCNFMNFARNVKCRECEEARPKRQLTGGEWECPQCDFYNYGRNMTCLRCDCKRPGQISLGPANTLSNMGYGNGDNTNTSEIDSRLAANEEKARRWFSKVSQLDSSADIDSLIGDEDFPEIMPLRKGVNRFVVSTRKTPLERRLADARYRRNLDNNGIPRVEDFKAEESTRINDPPFSSDLAAQKIENMTTEKSETDAQYADSSSRVSDEDFPEVMPMRTGENRFVVSKKKDRSLTSPAYKRRLAMEQSGNNTNFVPFVPFPPDYFAKKDKQPENGVDSVDISSTAESSSISEAAENLPKMPDDARARAELRGANYSPGMTNAETMSGVPEIFHNATFGRERKENVREIRRQDENMKNCSPEPSRQHSTKNDIGSISGALTSGNSSFNQENSGNKNSNQEPNLTGSLENQNNRTQWTGKSLEGSAVKEPDPLDMSEEAKAERWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRSTSQQYRRNLPVVSSDPLKKENEGS* 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2107 793 SUPERFAMILY Ran binding protein zinc finger-like 267 302 IPR036443 -
Ahy16g2107 793 PANTHER ZINC FINGER PROTEIN 410 433 - -
Ahy16g2107 793 PANTHER ZINC FINGER PROTEIN 478 792 - -
Ahy16g2107 793 SMART zf_4 308 332 IPR001876 -
Ahy16g2107 793 SMART zf_4 275 299 IPR001876 -
Ahy16g2107 793 MobiDBLite consensus disorder prediction 47 72 - -
Ahy16g2107 793 ProSiteProfiles Zinc finger RanBP2 type profile. 306 335 IPR001876 -
Ahy16g2107 793 ProSiteProfiles Zinc finger RanBP2 type profile. 273 302 IPR001876 -
Ahy16g2107 793 MobiDBLite consensus disorder prediction 546 582 - -
Ahy16g2107 793 ProSitePatterns Zinc finger RanBP2-type signature. 277 296 IPR001876 -
Ahy16g2107 793 MobiDBLite consensus disorder prediction 761 793 - -
Ahy16g2107 793 MobiDBLite consensus disorder prediction 613 716 - -
Ahy16g2107 793 PANTHER ZINC FINGER PROTEIN VAR3, CHLOROPLASTIC 3 415 - -
Ahy16g2107 793 MobiDBLite consensus disorder prediction 640 700 - -
Ahy16g2107 793 ProSitePatterns Zinc finger RanBP2-type signature. 310 329 IPR001876 -
Ahy16g2107 793 MobiDBLite consensus disorder prediction 469 490 - -
Ahy16g2107 793 MobiDBLite consensus disorder prediction 469 485 - -
Ahy16g2107 793 MobiDBLite consensus disorder prediction 556 574 - -
Ahy16g2107 793 PANTHER ZINC FINGER PROTEIN VAR3, CHLOROPLASTIC 478 792 - -
Ahy16g2107 793 PANTHER ZINC FINGER PROTEIN 3 415 - -
Ahy16g2107 793 Pfam Zn-finger in Ran binding protein and others 274 300 IPR001876 -
Ahy16g2107 793 Pfam Zn-finger in Ran binding protein and others 308 334 IPR001876 -
Ahy16g2107 793 PANTHER ZINC FINGER PROTEIN VAR3, CHLOROPLASTIC 410 433 - -
Ahy16g2107 793 MobiDBLite consensus disorder prediction 615 639 - -
Ahy16g2107 793 Gene3D - 266 303 - -
Ahy16g2107 793 Gene3D - 304 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2107 Ahy-Chr16 117168944 117172747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g2107 89 339 EF-hand Containing Proteins AT1G55040 33.788 2.01e-43 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2107 - - aip:107604755 1396.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2107 16 117168944 117172747 Ahy16g2107 16 117168944 117172747 ECH
Ahy16g2107 16 117168944 117172747 Ahy6g1817 6 88555015 88559218 hybridization