Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1626 ATGTTGTTCACTTGTTTGTGTTTGATACAAGTTGAAGACTTGAACTATCCTTTGGCTACTCAACACTCAACAACACTCTGTATATATAGTGACAATTTCAGAAGCATGGAATCCGCCAAAACAATGTTTATTACATCTCCACCCTTCCCTCCAAGAACTCTCCTTTCTTCTACCTCTTCGGCTTCAGTTCTGATGCTTCATGAACAAGCTGCACCTTTAGTTGCTTCTTGGTCTTCAAGTTTTGCTGCTCAGCATTTTCCTACCTCTGTTCTCTCGCAAGAGCAGCGTGATGAGTATAAGCCTCTGCTTCACTTGTATAAGGAAGATAAGAACTCTCAGGTTACATCAAATACAAGAAATGTGGATACGGGCTTGGTCCGCGATAATGATAGCAATGATAATGCTGATCAGTTAGTGCATCACTTTAGGCAGCAGTTGCAACTCTGGTCACATTTGCAGAATGTATTGAAATCCTCAACAGGGGAAACTGCTGCGGCTTCATCTCTGCAGCCCGAAAGAGTTGATTCAGATAGACCTGCAGATGGTTTGCAATTTGATGCAGTATCCCTCTCTAAGCAAGCTCTGTCGGCCGCAAAACAAGCAGCATTAGTGGCTGAAGAGATGAAAATGATTGAAGATGACGAAGATGATGATCCACTTCCTCTTGGTCTGGCTTCCACAAGCTTAGCTGACACTTCAATTGGAAAGAATAAAATTGTGCGGTCAAGAAGGCTTCTAGAAAGGAGATTGAAGCAAAGAAAAGTTTCAAAATCAAAATTTCTTGATGAAGAAAGTTATCTTGCAAGAAAATCAGACCTACAGGGAAGGCTACAAGTAGAAAAGAAGATAAAGGAAGGATTCGATCAAAATGATCCCCTGCGCTTGTTCTTGTGGGGTCCTGAGACAAAGAAACTTTTGACCTCTGAAGAAGAGTCTCAATTGTTTGTTCAGCTACAGGATTTTCTGAGATTAGAAGAAGTAAAGATCAGGCTCCAATCTCAATTTGGACGGGAACCAACTTTGATTGAATGGGCTGAAGGTGTGGGTCTTAGCTGCCATGCCCTGCAGACACAGATCCATCATGGTAACATAATCAGAGGAAAGATAATTAATGCCAATTTACGGATGGTTGTTCATATTGCTAAACAGTATCAGGGTCGTGGTCTCAGTCTTCAGGACTTATTGCAGGAGGGAAGTATGGGACTTATGAAGAGTGTTGAAAGGTTTAAACCTCGAGTTGGTTGCCGGTTTGGTACCTATGCATACTGGTGGATAAGGCAAACAATTAGAAAGGCCATATTTCTACATTCCAGGTCAATCCGTCTGCCGGAGAGTTTATATACCCTTTTGGGCAAGGTCATGGAAGCAAAGAAATTATTCATTCAAGAAGGAAATCTTCACCCCAGTAAAGAAGAATTAGCAGAAAGGGTAGGAATTACCGTAGAAAAGTTTGAAAAGTTGTTATTTTCTGCAAGAATACCAATATCAATGCAGCAACCTGTGTGGGCAGACCAAGATACAACTTACCAGGAAATTACTGCAGATAGTGCAATTGAGATCCCAGGCTTGAGTGTCGAAAAAGAGCTTATGAGGAGGCACGTGCGCAACCTCCTAAGCATCTTAAGCCCAAAGGAGAAGAGGATAGTCAGTCTAAGATTTGGTATCGAGGATGGCCGCGAGAAATCTCTGCAAGAAATTGGAAACGTACTTGGTTTGACAAAGGAGAGGGTCCGACAGTTGGAGAGCCGAGCACTGAAGAAGCTCAAGCAGTGCCTTGAGAGCGAAGGACTTCATGCATATATGGACTTGATTGTATAG 1818 0.4235 MLFTCLCLIQVEDLNYPLATQHSTTLCIYSDNFRSMESAKTMFITSPPFPPRTLLSSTSSASVLMLHEQAAPLVASWSSSFAAQHFPTSVLSQEQRDEYKPLLHLYKEDKNSQVTSNTRNVDTGLVRDNDSNDNADQLVHHFRQQLQLWSHLQNVLKSSTGETAAASSLQPERVDSDRPADGLQFDAVSLSKQALSAAKQAALVAEEMKMIEDDEDDDPLPLGLASTSLADTSIGKNKIVRSRRLLERRLKQRKVSKSKFLDEESYLARKSDLQGRLQVEKKIKEGFDQNDPLRLFLWGPETKKLLTSEEESQLFVQLQDFLRLEEVKIRLQSQFGREPTLIEWAEGVGLSCHALQTQIHHGNIIRGKIINANLRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVERFKPRVGCRFGTYAYWWIRQTIRKAIFLHSRSIRLPESLYTLLGKVMEAKKLFIQEGNLHPSKEELAERVGITVEKFEKLLFSARIPISMQQPVWADQDTTYQEITADSAIEIPGLSVEKELMRRHVRNLLSILSPKEKRIVSLRFGIEDGREKSLQEIGNVLGLTKERVRQLESRALKKLKQCLESEGLHAYMDLIV* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1626 605 Gene3D - 442 518 IPR036388 -
Ahy16g1626 605 PRINTS Major sigma-70 factor signature 562 577 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ahy16g1626 605 PRINTS Major sigma-70 factor signature 541 553 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ahy16g1626 605 PRINTS Major sigma-70 factor signature 577 588 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ahy16g1626 605 PRINTS Major sigma-70 factor signature 393 406 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ahy16g1626 605 PRINTS Major sigma-70 factor signature 417 425 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ahy16g1626 605 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 442 515 IPR013324 -
Ahy16g1626 605 Gene3D - 519 602 IPR036388 -
Ahy16g1626 605 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 289 438 IPR013325 GO:0003700|GO:0006352|GO:0006355
Ahy16g1626 605 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 366 592 IPR014284 GO:0003700|GO:0006352|GO:0006355
Ahy16g1626 605 Pfam Sigma-70 region 2 370 433 IPR007627 GO:0003700|GO:0006352|GO:0006355
Ahy16g1626 605 Pfam Sigma-70 region 3 450 519 IPR007624 GO:0003700|GO:0006352|GO:0006355
Ahy16g1626 605 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 500 601 IPR013324 -
Ahy16g1626 605 ProSitePatterns Sigma-70 factors family signature 1. 393 406 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ahy16g1626 605 ProSitePatterns Sigma-70 factors family signature 2. 562 588 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ahy16g1626 605 Gene3D - 188 438 - -
Ahy16g1626 605 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 39 605 - -
Ahy16g1626 605 CDD Sigma70_r4 531 589 - -
Ahy16g1626 605 PIRSF Sigma_factor_SigC 29 605 IPR016262 -
Ahy16g1626 605 PANTHER RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED 39 605 - -
Ahy16g1626 605 Pfam Sigma-70, region 4 537 590 IPR007630 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1626 Ahy-Chr16 44648135 44652058 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1626 - - aip:107648612 1113.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1626 16 44648135 44652058 Ahy16g1626 16 44648135 44652058 ECH
Ahy16g1626 16 44648135 44652058 Ahy6g1464 6 35449616 35453488 hybridization
Ahy12g3058 12 120082113 120085835 Ahy16g1626 16 44648135 44652058 PCT