Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g3058 ATGGAATCTGTAACAAACATGTTTTGTTCCTCTTCACCTTTTCCTTCTAGAGCTTTTCATTGCAACAATTCACCTCCTTCTTCTCCTCCAGTTTTGACGCTCCGCGAACAGGTCGGCCTCACATTTTCCTCTTGTTCTTCTAGCATTTCAGCACAGCAATTTCCTACCTCGGTTCTTTTACAAGAGCCACGTGATGAATATAAATCTCTTTTGCACATGTATAAGGACGAAAAGACGTCTCAGATGGATAGTGCCCTGGTTGATGAAGAGAATGACACTGCCACTGCTGATCAATTAGTGCATGATTTTAGGAAGCAATTGCATGTTTGGTCTCATTTACAGAACATATTGAGTTCTTCGGGAATAGAAGACATTGCTGCCTCTTCGACTACAGAACGTGTCGCTCTTGACTCTGAGAGGCTGGCAGATGACTTGCAATGTAATGCAGTTTCTCTTGCTATGAAAGCGTTGTCAGCATCAAAACAAGCGGCCTCAGTAGTTGAAGACTTGAAATCACTTAAAGCTGATGATGATGAATCTCTTCATTTTGGTTTGGATGTCCCTTCGCTTCGAAGCAACAAAACTGTGAGGTCAACACGACTTCTAGAGAGACGATCAAAACAAAGAAAAGCGCCAAAGTCTAGAGCTAAGGATGATGAAACTTACCTTCCAAGAAAGGATAATGCTCAAGGAAGACTACGCGTAGGGAAGAAAATAAATGCAGAACTGAACCAAAATGATGCGCTGCACATGTTCTTGTGGGGTCCTGACACAAAGCAACTTTTGACACTTGAAGAAGAGTCTAAGTTGATTTCTCAGATACAGGACTTAATGAGATTAGAAGAAGTGAAAACCAGGCTTCAGTCTCAGTTTGGGAGGGAACCAACTGTCGTAGAATTGGCTGAGGGTACGGGACTTAGCTGCCGAACGCTGCAGATGCAGATTCATTGTGGTAACAGAAGCAGAGAAAAGCTGATACAAGCTAATTTACGCATGGTAGTTCATATTGCGAAAAATTATCTGGGTCGCGGCCTTAGCCTCCAGGACTTATTACAGGAGGGAAGTATGGGTCTAATGAGGAGTATTGAGAAGTTTAAACCACAAGCTGGCTGCCGTTTCAGTACTTATGCATACTGGTGGATAAGGCAATCAATCCGAAAAGCCATATTCAAACATTCCCGGACAATCCGTTTGCCCGAAAACATATATATCCTTTTAGGAAAGATATCTGAGGCAAAGAAACTATACATGCAAGAAGGAAATCTAGAACCAACCAAGGAAGAATTAGCATTGAGGGTAGGGATTACACGAGAGAAAATCGACCATTTGCTATATGTTGCAAGAAATCCAGTTTCTATGCAGCAAACTGTCTGGGCAGACCAAGCTACAACTTACCAGGAAATTACAGCAGACACCACAATTGAGACCCCAAACACGACAGTTGAAAAACAACTAATGAGACGGCATGTGCTCAACCTCCTACGTAACTTACGCCCAAAGGAAAGGAAGATCATCCGCCTAAGATTTGGTATTGAAGATGGCCAACAGAAATCTTTATCAGAAATCGGAGAAATATTCGGTTTGTCTAAGGAGAGGGTCCGTCAGTTGGAGAGTCGAGCATTGTTCAAGCTTAGGCAGTGTTTGGTGAGTCAAGGTCATGATGTTTACTCAGACTTGCTTGTATAG 1686 0.4259 MESVTNMFCSSSPFPSRAFHCNNSPPSSPPVLTLREQVGLTFSSCSSSISAQQFPTSVLLQEPRDEYKSLLHMYKDEKTSQMDSALVDEENDTATADQLVHDFRKQLHVWSHLQNILSSSGIEDIAASSTTERVALDSERLADDLQCNAVSLAMKALSASKQAASVVEDLKSLKADDDESLHFGLDVPSLRSNKTVRSTRLLERRSKQRKAPKSRAKDDETYLPRKDNAQGRLRVGKKINAELNQNDALHMFLWGPDTKQLLTLEEESKLISQIQDLMRLEEVKTRLQSQFGREPTVVELAEGTGLSCRTLQMQIHCGNRSREKLIQANLRMVVHIAKNYLGRGLSLQDLLQEGSMGLMRSIEKFKPQAGCRFSTYAYWWIRQSIRKAIFKHSRTIRLPENIYILLGKISEAKKLYMQEGNLEPTKEELALRVGITREKIDHLLYVARNPVSMQQTVWADQATTYQEITADTTIETPNTTVEKQLMRRHVLNLLRNLRPKERKIIRLRFGIEDGQQKSLSEIGEIFGLSKERVRQLESRALFKLRQCLVSQGHDVYSDLLV* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g3058 561 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 459 556 IPR013324 -
Ahy12g3058 561 PIRSF Sigma_factor_SigC 3 561 IPR016262 -
Ahy12g3058 561 Gene3D - 186 394 - -
Ahy12g3058 561 Gene3D - 398 475 IPR036388 -
Ahy12g3058 561 Pfam Sigma-70 region 2 325 394 IPR007627 GO:0003700|GO:0006352|GO:0006355
Ahy12g3058 561 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 321 548 IPR014284 GO:0003700|GO:0006352|GO:0006355
Ahy12g3058 561 PRINTS Major sigma-70 factor signature 497 509 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ahy12g3058 561 PRINTS Major sigma-70 factor signature 349 362 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ahy12g3058 561 PRINTS Major sigma-70 factor signature 518 533 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ahy12g3058 561 PRINTS Major sigma-70 factor signature 373 381 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ahy12g3058 561 PRINTS Major sigma-70 factor signature 533 544 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ahy12g3058 561 MobiDBLite consensus disorder prediction 212 229 - -
Ahy12g3058 561 ProSitePatterns Sigma-70 factors family signature 2. 518 544 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ahy12g3058 561 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 4 561 - -
Ahy12g3058 561 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 398 471 IPR013324 -
Ahy12g3058 561 Pfam Sigma-70, region 4 494 546 IPR007630 GO:0003700|GO:0006352|GO:0006355
Ahy12g3058 561 Gene3D - 476 548 IPR036388 -
Ahy12g3058 561 ProSitePatterns Sigma-70 factors family signature 1. 349 362 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ahy12g3058 561 Pfam Sigma-70 region 3 406 478 IPR007624 GO:0003700|GO:0006352|GO:0006355
Ahy12g3058 561 PANTHER RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED 4 561 - -
Ahy12g3058 561 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 245 395 IPR013325 GO:0003700|GO:0006352|GO:0006355
Ahy12g3058 561 MobiDBLite consensus disorder prediction 202 229 - -
Ahy12g3058 561 CDD Sigma70_r4 487 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g3058 Ahy-Chr12 120082113 120085835 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g3058 - - gmx:100778636 742.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g3058 12 120082113 120085835 Ahy12g3058 12 120082113 120085835 ECH
Ahy12g3058 12 120082113 120085835 Ahy16g1626 16 44648135 44652058 PCT
Ahy12g3058 12 120082113 120085835 Ahy6g1464 6 35449616 35453488 PCT