Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0605 ATGGCTGTAATTGGAGTTGGTGTGCAGCAACAGTTTTTGTGTTCCTCTGAATCAAAGTGGAGCATTCCAACTACGCCATGCAATCCCCTTACCAGCTCCATTCTCATACGCCCATTCAAAAAGATTCAATTTTCAGTCATTTCATGCTCTTCTTCTTCTTCCTCACCACCGTCACAGGCCGCAGAAGCTGAAACTCAAACTGCTGAATCTTCCGTCAATTTAGGTCTTCAGCTCTTCTCCAAAGGAAGGGTTAAGGATGCTTTAGCCCAGTTTGAAACAGCGCTTACCTTGAATCCCAATCCTGTGGAGGCCCAAGCTGCTTTCTACAACAAAGCTTGCTGCCATGCATACAGAGGGGAAGGAAAGAAAGCTGCAGATAGTCTCCGTACTGCTTTGAGGGAATACAACCTAAAATTTGGTACAATTCTCAATGATCCAGACTTGGCCTCTTTTAGAGCTTTGCCTGAGTTCAAAGAACTACAAGAAGAGGCCAGGATAGGTGGGGAAGATATTGGCAACAGTTTTCGGAGAGATCTAAAACTTATTAGTGAAGTTCAGGCACCGTTTCGTGGGGTTAGGAGGTTTTTTTATGTGGCATTCACAGCAGCTGCAGGAATATCATTGTTCTTCACTCTACCCAGGCTAATCCGTGCAATTCAAGGTGGTGATGGTGCTCCTGATCTACTGGAAACTGCAGGGAATGCTGCCATTAACATTGGAGGCATTGTTGCTTTTGTGGCATTATTTTTTTGGGACAATAAAAAGGAGGAGGAGCAGATTGAACAAATATCTCGAGATGAGACACTATCAAGGCTGCCTTTGCGCTTAACAACTAATCGTGTAGTTGAACTTGTTCAGCTACGGGACACAGTTAGGCCGGTTATATTAGCTGGGAAAAAAGAAACAGTATCTTTGGCTTTGCAAAGAGCAGAACGATTTCGCACTGAGCTCGTTAGACGTGGTGTCCTGTTAGTTCCTGTCATATGGGGAGAAGGTAGGGAAACCAAAACAAAAACAAAAATTGAGAAGAAAGGTTTTGGTCGTCCACAAAAGGCTGCTGAAGCTCTTCCGTCCATTGGGGAAGATTTTGATAAGCGAACACAGTCCATAGCTTCAAAATCGAAGTTGAAAGCAGAAATCAGGTTCAAGGCTGAAGTTGTATCGCAAGCAGAATGGGAACAGTGGATAAGAGATCAGCAGAAATCTGAAGGAGTTACTGTTGGCGAAGACGTGTACATAATAATGCGCTTAGATGGGAGGATTCGAAGATCGGGGAAAGGAATGCCTGACTGGCAGCAAATTGTGAAGGAGCTACCAGAAATGGAAGCATTTTTAAGCAAGCTGGAAAGATGA 1353 0.4412 MAVIGVGVQQQFLCSSESKWSIPTTPCNPLTSSILIRPFKKIQFSVISCSSSSSSPPSQAAEAETQTAESSVNLGLQLFSKGRVKDALAQFETALTLNPNPVEAQAAFYNKACCHAYRGEGKKAADSLRTALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGNSFRRDLKLISEVQAPFRGVRRFFYVAFTAAAGISLFFTLPRLIRAIQGGDGAPDLLETAGNAAINIGGIVAFVALFFWDNKKEEEQIEQISRDETLSRLPLRLTTNRVVELVQLRDTVRPVILAGKKETVSLALQRAERFRTELVRRGVLLVPVIWGEGRETKTKTKIEKKGFGRPQKAAEALPSIGEDFDKRTQSIASKSKLKAEIRFKAEVVSQAEWEQWIRDQQKSEGVTVGEDVYIIMRLDGRIRRSGKGMPDWQQIVKELPEMEAFLSKLER* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0605 450 SUPERFAMILY TPR-like 61 134 IPR011990 GO:0005515
Ahy16g0605 450 ProSiteProfiles TPR repeat profile. 68 101 IPR019734 GO:0005515
Ahy16g0605 450 Pfam Low psii accumulation1 / Rep27 176 253 IPR021883 -
Ahy16g0605 450 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 39 450 - -
Ahy16g0605 450 Gene3D Tetratricopeptide repeat domain 55 153 IPR011990 GO:0005515
Ahy16g0605 450 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 39 450 - -
Ahy16g0605 450 SMART tpr_5 68 101 IPR019734 GO:0005515
Ahy16g0605 450 SMART tpr_5 105 138 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0605 Ahy-Chr16 11362385 11364649 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0605 - - gmx:100784188 699.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0605 16 11362385 11364649 Ahy16g0605 16 11362385 11364649 ECH
Ahy16g0605 16 11362385 11364649 Ahy6g0696 6 8519177 8522307 hybridization