Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0550 ATGACAGGGGCAGTGATGGTGAGCAAGGGCGCTGGATGCGGTGGTGGTAGGAGAGCGTCGGAGCAAGACGACGACGAACAGAACCAGCTGTCTCCGGTGGCGGTTCTGTTGGCGGCGCTTAGGAAATCAATGGTGGCTTGCAGTGTAGACAGTCCCAAAGATGTGATATCGAATACCGTTCATCAAATGGAGATTGGATGGCCCACAAACGTTAAGCACGTTAGTCATGTCACCTTCGATCGCTTCAATGGCTTCCTTGGTCTCCCCGTTGAGTTAGAGGTTCATGTTCCCGCTCCTGTTCCCAGTGCTAGTGTTAGTGTTTTTGGTGTCTCAGCTGAATCAATGCAATGTTCTTATGATTCAAAAGGAAACAGTGTCCCAACTATTCTCTTGCTAATGCAGGAGCGACTATACTCACAGGAAGGCCTAAAGGCTGAAGGTATATTTAGGATAAACCCGGAAAACGGCGAAGAGGAGCTATTAAGGGACCAGCTGAATAGAGGCATTGTGCCGGAAGACATTGATGTTCATTGCTTGGCAGGGCTAATTAAAGCTTGGTTCCGAGAACTTCCTTCGGGGGTGCTCGATGGACTTTCCCCTGAGCAAGTTCTTCAGTGCAATACAGAAGAAGATGCTGTTGAGCTTGTGAAGCAGCTAAAGCCAACTGAATCAGCCTTGCTCAACTGGGCCATTGATCTCATGGCTGATGTTGTTGTAGAAGAGGAGTATAACAAAATGGATGCTAGAAATATAGCTATGGTTTTTGCTCCAAACATGACTCAGATGTCTGATCCATTAACTGCTCTGATGCATGCGGTCCAAGTGATGAATTTACTAAAGACCCTGATATTGAAGACACTTAGAGAACGCGAAGAAACAGCAACAGATGGTTATTCTCCCATGTCATTTCGCTCATCAGATTGCCAATCTGAGGATGAATATGACAGTCAGCAACTAACAGATACCAGCGGGGAATTGCGGGGAACAAAGTTAGATTATGACGATCATGATGATGATGCTAACTGCAGCCATAGCAGTGAAGGGGAAGAAAGGGAGGTCCAGTCTCTAAGCGAGATAGAGCATTGCTTCTTGAAGTGTTTGAATGAAAACACAGAAGAAGGATGCTCAGAACAAGAACCTCCTCCTGAAGGATCTTTGCTAGAAGAATTCTGTAGCCCCAAAAGTTGCTCTGGCTATAACAAGCAATCTGCTGTATCATTAACTAATATCAAACCTGGGAATTCGTGCTCAAGTCCCTCTTATGGAGACGATTCGAGTTCACCACTGACTGCGGAGGGGTCGAATGTCAACACAAGTAGCCCATCAACAGGAAGTACAGACACCAGTCATGTGGAGATAATAGATAAATTTGCAATATCTGAATCGTTGGGGCCACTGTTTTCATCTAGTTAA 1413 0.4579 MTGAVMVSKGAGCGGGRRASEQDDDEQNQLSPVAVLLAALRKSMVACSVDSPKDVISNTVHQMEIGWPTNVKHVSHVTFDRFNGFLGLPVELEVHVPAPVPSASVSVFGVSAESMQCSYDSKGNSVPTILLLMQERLYSQEGLKAEGIFRINPENGEEELLRDQLNRGIVPEDIDVHCLAGLIKAWFRELPSGVLDGLSPEQVLQCNTEEDAVELVKQLKPTESALLNWAIDLMADVVVEEEYNKMDARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLILKTLREREETATDGYSPMSFRSSDCQSEDEYDSQQLTDTSGELRGTKLDYDDHDDDANCSHSSEGEEREVQSLSEIEHCFLKCLNENTEEGCSEQEPPPEGSLLEEFCSPKSCSGYNKQSAVSLTNIKPGNSCSSPSYGDDSSSPLTAEGSNVNTSSPSTGSTDTSHVEIIDKFAISESLGPLFSSS* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0550 470 Pfam RhoGAP domain 127 261 IPR000198 GO:0007165
Ahy16g0550 470 SMART RhoGAP_3 124 287 IPR000198 GO:0007165
Ahy16g0550 470 SUPERFAMILY GTPase activation domain, GAP 106 284 IPR008936 GO:0007165
Ahy16g0550 470 SMART PBD_5 65 99 IPR000095 -
Ahy16g0550 470 MobiDBLite consensus disorder prediction 327 354 - -
Ahy16g0550 470 ProSiteProfiles Rho GTPase-activating proteins domain profile. 110 291 IPR000198 GO:0007165
Ahy16g0550 470 PANTHER MKIAA1688 PROTEIN 1 469 IPR044785 GO:0005096
Ahy16g0550 470 CDD RhoGAP 127 277 - -
Ahy16g0550 470 MobiDBLite consensus disorder prediction 408 448 - -
Ahy16g0550 470 CDD CRIB 63 93 - -
Ahy16g0550 470 Gene3D Rho GTPase activation protein 98 294 IPR008936 GO:0007165
Ahy16g0550 470 MobiDBLite consensus disorder prediction 1 28 - -
Ahy16g0550 470 Pfam P21-Rho-binding domain 64 92 IPR000095 -
Ahy16g0550 470 PANTHER RHO GTPASE ACTIVATION PROTEIN-RELATED 1 469 - -
Ahy16g0550 470 MobiDBLite consensus disorder prediction 298 325 - -
Ahy16g0550 470 ProSiteProfiles CRIB domain profile. 65 78 IPR000095 -
Ahy16g0550 470 MobiDBLite consensus disorder prediction 293 354 - -
Ahy16g0550 470 Gene3D CRIB domain 61 96 IPR036936 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0550 Ahy-Chr16 10335502 10337975 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0550 - K20642 gmx:100812700 655.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0550 16 10335502 10337975 Ahy16g0550 16 10335502 10337975 ECH
Ahy16g0550 16 10335502 10337975 Ahy6g0764 6 9402546 9405021 hybridization
Ahy16g0550 16 10335502 10337975 Ahy12g2563 12 114937282 114940588 PCT
Ahy16g0550 16 10335502 10337975 Ahy2g2225 2 98180081 98183394 PCT
Ahy12g2563 12 114937282 114940588 Ahy16g0550 16 10335502 10337975 PCT
Ahy2g2225 2 98180081 98183394 Ahy16g0550 16 10335502 10337975 PCT