Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0291 ATGAAGCGAGTTTGGAGATTCACTTCAGACGCAGTAGCGCAAGCCGAACACTTCTGCTTCCACTCCCATGGAATCCCTAACCCTAAACCTAATATTCCGTCCTTTACTACCACCACTGCCGCATTCACATCGCCTGGCCTCACGCGCCGCCACTGCACCTCCGCTACCCCTCCTCCTCCTCACCCGCTCCAAGATATTACTCCCCTCTTCATCGAGAAACGCAGGCTTCCGTTCGGAGAGGATCTCATCAATAAAGCATCGGTTTTGAAGAACCAACTGGTTCTCGAAGCCTCGGATTCCAATCGGGTAATTGAGATCCTCGATGAGAACTCTGCATCACTGATTGAAAGTCATGTAGGTGGATCTGTGCTGCTCGAGCTCTTGAATCAGTTGGATTCGTGGCCTTCCTTGGCCCTTCAGGTGTTTGATTGGAGGAGGGAGAAGAAGAATTATGGTGTTGACTCCCCCATGAGTGTATATGAGTATTCTAAGGGCATAAAAGCTGCAGGTAGATGTAAAGATGTTCATCATGCCGTTGAGATCTTTCTAGATGCTGCAAAGAAGGGCATGAGAACGACCAGCACTTACAATGCATTGATGAGTGCTTTTATGTTCAATGGTCTTGCAAAGAATTGTCACGAGTTGTTCTGTGATATGAAGAAGCATGCAGCTTGTCCTCCTTCAATTGGCACATACAATATTCTCATATCTCTTTACTCTCGCTTGCTGTTGGTGGATCACATGGAAGAAACATACCAGGCAATAAAAGAGTCGGACCTCCAACCCAGTGAGAATACTTATAATTATTTGATTGCTGGATATATCTCGGCTTCGATGTGGCATGACATGGAGAGAGTTTTTCAAATGATGAACAGAGGCCCTGTCAAGCCTAACTTGAAAACCCACCTGCTAATGCTTCGAGGCTATGGACAATCAGGTAATCTGGAGAAGATGGAAGAGATGTATTCTCTAGTAAGGGATCATGTAAACAAAAAAGAAATTCCATTGATCAGGGCCATGATATGTGCGTATTGTAAAAGTTCAGATTCGGATAGAGTGAAGAAGGTAGAGGGATTGTTGAAGCTTATTCCACAAAAACATTACAGACCATGGTTGAACGCCTTGTTGATTAAGCTCTATTCCCAGGAGGACTGGTTAGAGGAAATGGAGATTGCAATTAATGAGGCTTTTGAGCGCAGAACCCGGATAGCCTCAGCAAGTATTATGAGATGCGTTACTGCAACTTATTATCGGTGTAATGCAATAGAAAGGCTAGAAACTTTTGTGAAACGTGCTGAATGTGCTGGGTGGAGAATCTGTCGGTCCTTGTATCATTTAGTTATTGCAGATGGTGTTGTACATGTGCAGTCTTTGGGAGATGAAGGGTCCCCAACACATTGA 1401 0.4475 MKRVWRFTSDAVAQAEHFCFHSHGIPNPKPNIPSFTTTTAAFTSPGLTRRHCTSATPPPPHPLQDITPLFIEKRRLPFGEDLINKASVLKNQLVLEASDSNRVIEILDENSASLIESHVGGSVLLELLNQLDSWPSLALQVFDWRREKKNYGVDSPMSVYEYSKGIKAAGRCKDVHHAVEIFLDAAKKGMRTTSTYNALMSAFMFNGLAKNCHELFCDMKKHAACPPSIGTYNILISLYSRLLLVDHMEETYQAIKESDLQPSENTYNYLIAGYISASMWHDMERVFQMMNRGPVKPNLKTHLLMLRGYGQSGNLEKMEEMYSLVRDHVNKKEIPLIRAMICAYCKSSDSDRVKKVEGLLKLIPQKHYRPWLNALLIKLYSQEDWLEEMEIAINEAFERRTRIASASIMRCVTATYYRCNAIERLETFVKRAECAGWRICRSLYHLVIADGVVHVQSLGDEGSPTH* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0291 466 Pfam Pentatricopeptide repeat domain 255 310 IPR002885 -
Ahy16g0291 466 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 226 IPR002885 -
Ahy16g0291 466 PANTHER EXPRESSED PROTEIN 1 446 IPR044179 GO:0003729
Ahy16g0291 466 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 297 IPR002885 -
Ahy16g0291 466 TIGRFAM PPR: pentatricopeptide repeat domain 231 263 IPR002885 -
Ahy16g0291 466 TIGRFAM PPR: pentatricopeptide repeat domain 266 298 IPR002885 -
Ahy16g0291 466 PANTHER OS05G0407900 PROTEIN 1 446 - -
Ahy16g0291 466 Gene3D Tetratricopeptide repeat domain 84 223 IPR011990 GO:0005515
Ahy16g0291 466 Gene3D Tetratricopeptide repeat domain 224 456 IPR011990 GO:0005515
Ahy16g0291 466 Pfam PPR repeat family 192 237 IPR002885 -
Ahy16g0291 466 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 262 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0291 Ahy-Chr16 6293429 6296496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g0291 157 388 Miscellaneous Gene Families AT4G11690 21.951 4.90e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0291 - - gmx:100816768 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0291 16 6293429 6296496 Ahy16g0291 16 6293429 6296496 ECH
Ahy16g0291 16 6293429 6296496 Ahy6g1033 6 13745949 13748983 hybridization