Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3091 ATGCCGTGCCAGGACTCGGAGCTGAAGGCGGCGAAGACTGCGTACCGGAGCGCCAAGGCTGAGGGTAACCACCGCGAGGAGGCGCGTTGGGCCAACGTCATTGGCGACATTCACAAGAACAGAGGAGAGTACGTGGAAGCCCTCAAATGGCTCCGAATCGATTACGATGTTTCGCTAAAATACTTGCTGGAAAAGGATTTGCTCCCTACCTGCCAATCCATCGGCGAGATGTACCTCCGCCTCGAGCAGTTCTCTGAAGCTCTAACTTACCAGAAGAAGCACTTGGAGCTTGCAAGAGAAGCTGACGATGTGGTTGAGCAGCAAAGAGCGAGCACGCAGCTAGGTCGAACATACCACGAGCTGTTCTCGAGATCCGATCACGACCACAACTCGATTCGCAACGCGAAGAAGTATTTCAACTTTGCAATGGAGCTTGCAGTGGCTCTGAAGAAGAAACCGCCAAGCAGCAAGTCTTCGTTCCTGAAGGAGTATATCGATGCGCACAACAACAAAGGGATGCTGGAAATGGAGCTCGATAACTTGCAGGAAGCGAAGGAGATATTAACTCGAGGGTTGGAAATTTGTGATGAGGAGGAGGTTAGTGAATTTGATGATGGGAGGAGCAGGCTCCACCATAACCTTGGGAATGTGTACATGGAACTCAGGAATTGGAATGAAGCTAGGTGGAATATCAAAATGGACATTCAGATTTGTAACAAGATTGGCCACCGTCAAGGGGAAGCGAAAGGGTATATCAATCTTGGGGAATTGCATTCCAGGACTCAGAAGTATGAGGAGGCAATCTCTTTTTATAACAAGGCACTTGGTTTGGCAAGGTCCTTGGAGGATGAGGATGCTTTGGTGAGGCAAATTGAGCAGAATATTAGGACTGTAAAGGAAGCTGTCAAAGTGATGGATGAGATAAAGAAGGAAGAGCAGAACCTCAAGAAGCTTAAAAGAGATATCGCCGTTGCCAGAGGGACACCTAATGAGCGGAAATGCCTGCTCCAGCAGAATGGCTCTCTTGAACGCCTTGTGGAGAAGTCAAGAATGATATCTGCATGGGAGAAGCATTGCGAATTTGCAAAGGAGAAGAAGAGAATAGCAAGTGAACTTTGTGACAAGCAAAGGCTTGGTGATTCATATATGGATGTTGGAGAATCATATCAGAAGCTTAGAAAATTCAACAAAGCAATCAAAAGGTACAAGAAGAGTTGGGAAATGTACCAAACAATTGGCAGTTTAGAGGGTCAAGCATTGGTAAAAATCAATATTGGCAATGTTTTGGATTCTGCTCAAAAGTGGAGAGAAGCATTAGATGCATATACTGAAAGCTATAGGATTGCTGTTGAAGCTCAACTTCCTGATATACAGCTTTCTGCATTAGAAAATATGCATTATAGTAACATGATAAGATTTGATGATGAATCCGAGACAAAGAGGTTGAAAATTTTAATTGATAAGCTGAAGAACTCAATAGAAGCTGAGTCAGGTGCTAAAAATATGGCAGAAGATTGTTGCTCTGAGACTGATACTGAGGCAGACAATAATCTGTCAATAGCTGGGTCTGATGACCTTTGCTCTCCACATACCAGTTCTAGATCAAAAGCTCTATCTACTGGAGAAGAATTTATAGATGACATGCCACTTATGTCAATCTATCAGTCCTTAAAAGGCTCATCCAGAAAGACAACAGGTCACATGGAAGATCTTACCAGCACCAAGCAAGCTGATAAGTCATCCAAAAGTCTTACAAATTTAACCGGTAATCATCAGGCAGTTGTTGGACGTAAACGTGTCCGTGTAATTCTGTCTGATGATGAAGAGGAGATGGAGTGTTCAAGCAAACGGAGTCATGATTGCGTGTTAGAAGACAGGTCTACTTATGATGCAAATATGAGTAAAGTGAGTCCTAGTAACATTAAGGTTATCTCAGAGAATGGATCCAAACTTCCAATTAATGTTGAAGAAAGTAGCAGTTCTTTCAAATGCTGGAGTCCACATACACTTGCTAAAACTTGCAGACATTCCAGATCCATGAGCAATGACCTAGTTGCTGAACTTGATCTTCCTAGTGGTTCTAAATGCAACACAGATGCCTCTGGTAAACCAAGTGATGCTGCCCCTCCTGCGTCAAATAGTTCTCAATACGATAAATATATTGAGTGCCAGATTGGGAATGATCTAATTCACATAGAAGCAACCTGGTGTACTGCCAGTGATAAGCTGGATATTGAATCTTTGAAAGCTGTAGCTGCATGCTTATACTATCTACAACTTCCTACACAAAAGAGATCAGATGGTCTGTTGCCTGTTGTTCAGCACATTTTATGTGCTGGAAGAGATCTAGAATCCCTAGAAACTGTTGAAAACCTTCAGATATGCAATGTCACAATTGAAGCGTCCATTGATGGATGGATTCATAAGCGCCTCATAAAAATGTATGTAGACTTTTGCAAGCAGCTGTCAGAGAAGCCAAATATGAAGGTACTGAAGAAACTCTACAATCTAGAGGTTTCGGATGATGAAATAGTAGTGTCTGAGTGTGACCTGCAAGATTTGTCTATAACTCCATTGATAAATGCATTGCAGTCCCAAAAAGCATTTTCAATGCTTGACCTCTCTCACAATTTGTTAGGAAATGGGACAATGGAAGCACTTCAGAAGGTCTTCACAGCATCAGACCAACATTATGGTGACTTAACACTTGATTTGCATTGTAATCGATTTGGTCCAACCGCTCTGCTGCAGATTTGTGAATGCTCAGTGCTGTTTGATAGACTGGAAGTGCTCAACATTTCTGGAAATCGTCTTACTGATGCATGTGGATCTTATCTTTCAACTATCTTGAAAAAATGTAAAGGACATAACAGCCCGGTATCTGGAAATACTATAGTTAATCTTTTGTCCAAGCTTTCCACTTTGAAAAGGTTTTCGGAGCTGAATCTCAGTGGTCTAAAACTAGGCAAACCAGTAGTTGATGCCCTTTGCCAGCTTGCAGGTACCTTGAGTTTATCAGGACTAATTCTTGGAGGTACCAGTATCGGAACAGAAGGGGTAATGCAATTAGCAGAACCATTGCTGAAAGGGGCTGAAGAGTTTGTGAAACTTGATCTATCATATTGTGGGCTCACATCAAACTTTGTTTCAAATATCAATGTTAATTTGTTTTGTTCCATCCTTGAGCTGAACCTGGAAGGAAATCCTGTTCTGCCTGAGGGCGGAAATACTCTATGTTCTCTTCTAGTAAACCCATCATGCTCTCTCAAAGTGTTGGTCCTTAGAAAGTGTCAACTTGGGCTCGCTGGGGTTCTCCACATAATTGAGGCACTGGCAGAGAACAACAGCCTGGAGGAGCTTAATCTTGCTGATAATACTGTACCAAATGAACTTTATGCTCTAAAATCCGACTTAACAGTAAAAGGTGACTCTGAAAAACACGATCAGATACTTGATACGATTAAGTTGGCGGGTAATCAAGAGGTCCATTGCTCTGTAAACTTGGACTACCATCAGCTTGAAGTTGCTGATAGTGAAGATGAAACAGTTAAAGCAGCTGCTTCTGGAATAGATGACAGTGCCAGTTCGTGTCAAAGAAATTCTTCATCTGCGGAGTGCCTTTTAACTCAACAACTTGCAGTGGCTATTGGCAAGGCAAAGAAATTGCAATTACTAGACCTTAGCAACAATGCTTTTTCATTGGAAGCTGCAGAAACTTTCTATAATTCCTGGACAAGTGTACGGGTGCCAAGTCAGAAGCACATTAATGAGGGGATTATGCATTTCTCAACAAAAGAAAAGAAGTGCTGCAGAGTGAAACCGTGCTGCAAAAAAGTCCTGCCTTTATAG 3849 0.424 MPCQDSELKAAKTAYRSAKAEGNHREEARWANVIGDIHKNRGEYVEALKWLRIDYDVSLKYLLEKDLLPTCQSIGEMYLRLEQFSEALTYQKKHLELAREADDVVEQQRASTQLGRTYHELFSRSDHDHNSIRNAKKYFNFAMELAVALKKKPPSSKSSFLKEYIDAHNNKGMLEMELDNLQEAKEILTRGLEICDEEEVSEFDDGRSRLHHNLGNVYMELRNWNEARWNIKMDIQICNKIGHRQGEAKGYINLGELHSRTQKYEEAISFYNKALGLARSLEDEDALVRQIEQNIRTVKEAVKVMDEIKKEEQNLKKLKRDIAVARGTPNERKCLLQQNGSLERLVEKSRMISAWEKHCEFAKEKKRIASELCDKQRLGDSYMDVGESYQKLRKFNKAIKRYKKSWEMYQTIGSLEGQALVKINIGNVLDSAQKWREALDAYTESYRIAVEAQLPDIQLSALENMHYSNMIRFDDESETKRLKILIDKLKNSIEAESGAKNMAEDCCSETDTEADNNLSIAGSDDLCSPHTSSRSKALSTGEEFIDDMPLMSIYQSLKGSSRKTTGHMEDLTSTKQADKSSKSLTNLTGNHQAVVGRKRVRVILSDDEEEMECSSKRSHDCVLEDRSTYDANMSKVSPSNIKVISENGSKLPINVEESSSSFKCWSPHTLAKTCRHSRSMSNDLVAELDLPSGSKCNTDASGKPSDAAPPASNSSQYDKYIECQIGNDLIHIEATWCTASDKLDIESLKAVAACLYYLQLPTQKRSDGLLPVVQHILCAGRDLESLETVENLQICNVTIEASIDGWIHKRLIKMYVDFCKQLSEKPNMKVLKKLYNLEVSDDEIVVSECDLQDLSITPLINALQSQKAFSMLDLSHNLLGNGTMEALQKVFTASDQHYGDLTLDLHCNRFGPTALLQICECSVLFDRLEVLNISGNRLTDACGSYLSTILKKCKGHNSPVSGNTIVNLLSKLSTLKRFSELNLSGLKLGKPVVDALCQLAGTLSLSGLILGGTSIGTEGVMQLAEPLLKGAEEFVKLDLSYCGLTSNFVSNINVNLFCSILELNLEGNPVLPEGGNTLCSLLVNPSCSLKVLVLRKCQLGLAGVLHIIEALAENNSLEELNLADNTVPNELYALKSDLTVKGDSEKHDQILDTIKLAGNQEVHCSVNLDYHQLEVADSEDETVKAAASGIDDSASSCQRNSSSAECLLTQQLAVAIGKAKKLQLLDLSNNAFSLEAAETFYNSWTSVRVPSQKHINEGIMHFSTKEKKCCRVKPCCKKVLPL* 1283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3091 1282 ProSiteProfiles TPR repeat region circular profile. 248 275 - -
Ahy13g3091 1282 SMART tpr_5 68 101 IPR019734 GO:0005515
Ahy13g3091 1282 SMART tpr_5 419 452 IPR019734 GO:0005515
Ahy13g3091 1282 SMART tpr_5 248 281 IPR019734 GO:0005515
Ahy13g3091 1282 SMART tpr_5 165 198 IPR019734 GO:0005515
Ahy13g3091 1282 SMART tpr_5 379 412 IPR019734 GO:0005515
Ahy13g3091 1282 SMART tpr_5 208 241 IPR019734 GO:0005515
Ahy13g3091 1282 Pfam Tetratricopeptide repeat 208 279 - -
Ahy13g3091 1282 Gene3D Tetratricopeptide repeat domain 2 313 IPR011990 GO:0005515
Ahy13g3091 1282 Coils Coil 178 198 - -
Ahy13g3091 1282 ProSiteProfiles TPR repeat profile. 248 281 IPR019734 GO:0005515
Ahy13g3091 1282 SMART LRR_RI_2 1219 1246 - -
Ahy13g3091 1282 SMART LRR_RI_2 1002 1029 - -
Ahy13g3091 1282 SMART LRR_RI_2 925 952 - -
Ahy13g3091 1282 SMART LRR_RI_2 866 893 - -
Ahy13g3091 1282 SMART LRR_RI_2 1057 1084 - -
Ahy13g3091 1282 SMART LRR_RI_2 1086 1113 - -
Ahy13g3091 1282 SMART LRR_RI_2 1114 1140 - -
Ahy13g3091 1282 SUPERFAMILY TPR-like 149 284 IPR011990 GO:0005515
Ahy13g3091 1282 SUPERFAMILY TPR-like 14 199 IPR011990 GO:0005515
Ahy13g3091 1282 SUPERFAMILY RNI-like 830 1244 - -
Ahy13g3091 1282 MobiDBLite consensus disorder prediction 520 540 - -
Ahy13g3091 1282 MobiDBLite consensus disorder prediction 559 584 - -
Ahy13g3091 1282 PANTHER PROTEIN TONSOKU 1 955 IPR044227 GO:0005634|GO:0006325|GO:0009933|GO:0040029|GO:0072423
Ahy13g3091 1282 PANTHER PROTEIN TONSOKU 955 1278 IPR044227 GO:0005634|GO:0006325|GO:0009933|GO:0040029|GO:0072423
Ahy13g3091 1282 SUPERFAMILY TPR-like 374 454 IPR011990 GO:0005515
Ahy13g3091 1282 Coils Coil 281 328 - -
Ahy13g3091 1282 Gene3D Ribonuclease Inhibitor 818 1256 IPR032675 -
Ahy13g3091 1282 Gene3D Tetratricopeptide repeat domain 321 472 IPR011990 GO:0005515
Ahy13g3091 1282 MobiDBLite consensus disorder prediction 520 539 - -
Ahy13g3091 1282 ProSiteProfiles TPR repeat profile. 379 412 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3091 Ahy-Chr13 124719063 124727392 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3091 - - aprc:113856161 1857.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3091 13 124719063 124727392 Ahy13g3091 13 124719063 124727392 ECH
Ahy13g3091 13 124719063 124727392 Ahy3g2757 3 121348699 121357211 hybridization