Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2443 ATGAAGACTGTTATGGAAGAAATTAATGTTATAAAAGCTAAGGATGGAACTGTTGCTGTAGCTTCTGCATTTGCTGGCCACAAAGAAGCAATAAAGGACAGAGACCACAAATTTTTAAGGAAAGCCATTGAAGAAGCATATAAAGGTGTTGAATGTGAAGATGGAGGCCCTTTTGGTGCTATTATTGTTTGTAATGATGAAATTGTTGCTGCTTCTCACAACATGGTTTTAAGGAACACTGATCCAACTGCTCATGCAGAAGTAACTGTAATAAGAGAGGCCTGTAGAAAACTTAAGCAGATAGAACTTTCAGAGTGTGAAATTTATGCTTCTTGTGAACCGTGTCCCATGTGCTTTGGTGCAATCCACCTTTCAAGAGTTAAGAGGTTGGTATATGGGGCAAAAGCTGAGGCAGCAATTGCGATTGGGTTCGATGATTTCATTGCTGATGCACTGCGTGGTACTGGATTTTATCAGAAAGCGCAGTTAGAGATTAAAAAAGCTGATGGCAATGAGGCTATTGTTGCTGAGGAGGTTTTCGAGAAAACAAAGGAAAAATTTCGAATGTATTAA 573 0.3909 MKTVMEEINVIKAKDGTVAVASAFAGHKEAIKDRDHKFLRKAIEEAYKGVECEDGGPFGAIIVCNDEIVAASHNMVLRNTDPTAHAEVTVIREACRKLKQIELSECEIYASCEPCPMCFGAIHLSRVKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKKADGNEAIVAEEVFEKTKEKFRMY* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2443 190 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 33 147 IPR002125 -
Ahy13g2443 190 SUPERFAMILY Cytidine deaminase-like 29 148 IPR016193 GO:0003824
Ahy13g2443 190 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 34 133 IPR002125 -
Ahy13g2443 190 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 85 122 IPR016192 GO:0008270|GO:0016787
Ahy13g2443 190 CDD nucleoside_deaminase 39 146 - -
Ahy13g2443 190 Gene3D Cytidine Deaminase, domain 2 34 190 - -
Ahy13g2443 190 PANTHER CYTIDINE/DEOXYCYTIDYLATE DEAMINASE FAMILY PROTEIN-RELATED 5 189 - -
Ahy13g2443 190 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 5 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2443 Ahy-Chr13 56853550 56867278 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2443 - - gmx:100500436 328.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2169 11 134206139 134209416 Ahy13g2443 13 56853550 56867278 PCT
Ahy1g2667 1 105726416 105728817 Ahy13g2443 13 56853550 56867278 PCT
Ahy13g2443 13 56853550 56867278 Ahy11g2169 11 134206139 134209416 PCT
Ahy13g2443 13 56853550 56867278 Ahy1g2667 1 105726416 105728817 PCT