Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1421 ATGGCGACACTTGATTCCGATGTTCCTATGGTTCCCGCCGGCGAGCCCTCCAGCAGCGCCGCCGGCCCTTCCACCAAGAAGCCCAAACGCTTCGAGATCAAGAAGTGGAACGCCGTTGCTCTATGGGCTTGGGATATTGTTGTGGATAACTGTGCCATCTGCAGGAACCACATCATGGATCTCTGTATCGAGTGCCAAGCTAATCAAGCTAGTGCAACTAGCGAGGAATGCACTGTGGCTTGGGGGGTTTGTAACCATGCTTTTCACTTCCATTGCATTAGTCGTTGGCTCAAGACCCGTCAAGTATGTCCTCTAGATAACAGTGAGTGGGAATTTCAGAAATATGGTCACTAG 354 0.5113 MATLDSDVPMVPAGEPSSSAAGPSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH* 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1421 117 SUPERFAMILY RING/U-box 29 114 - -
Ahy13g1421 117 PANTHER RING BOX 1 117 - -
Ahy13g1421 117 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RBX1 1 117 - -
Ahy13g1421 117 Pfam RING-H2 zinc finger domain 49 107 IPR024766 GO:0008270
Ahy13g1421 117 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 117 IPR013083 -
Ahy13g1421 117 MobiDBLite consensus disorder prediction 1 28 - -
Ahy13g1421 117 CDD mRING-H2-C3H2C2D_RBX1 49 110 - -
Ahy13g1421 117 ProSiteProfiles Zinc finger RING-type profile. 62 107 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1421 Ahy-Chr13 18037177 18039518 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g1421 K03868 - gmx:100789570 241.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0741 18 8181832 8183614 Ahy13g1421 13 18037177 18039518 PCT
Ahy8g1524 8 32047076 32048860 Ahy13g1421 13 18037177 18039518 PCT
Ahy13g1421 13 18037177 18039518 Ahy18g0741 18 8181832 8183614 PCT
Ahy13g1421 13 18037177 18039518 Ahy8g1524 8 32047076 32048860 PCT