Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1411 ATGGGTTCTGCTTCAGAAAATCTCCCTTCAACACCACCATCACCATGTTTATCATCATTTAGTTCTTCAAAGCATGATTTTCATGAATCAAATAATGGTGAACTTGAGAGGATCCTGTCGGACACAAGTGTTCCTCGTTCAAAGAGACTTGGAGCGGCCACGTGGATTGAGTTCAAGCTGCTATTTTACCTTGCTGCCCCTGCAGTTATAGTGTATGTCATCAACTATGTTATGTCTATGTCAACACAAATTTTCTCAGGGCATCTTGGTAATCTTGAGCTTGCTGCCTCTTCCCTGGGAAACAATGGCATCCAAATCTTTGCTTATGGTCTCATGTTGGGGATGGGTAGTGCTGTAGAGACATTATGTGGACAAGCATACGGGGCACAAAAATTCGAAATGCTTGGAGTATATCTACAAAGATCAACAATCCTTTTATCAATAGCAGGTATAGTCCTAACATTCATCTACATATTCTCGGAGCCCATTTTGGTCTTTTTAGGAGAATCCCCAAGAATCGCATCGGCAGCAGCACTTTTCGTGTACGGCCTAATCCCACAAATATTTGCGTACGCCGTAAACTTCCCAATCCAGAAGTTTCTACAGGCACAAAGCATAGTGGCACCGAGCGCGTACATCTCAACCGCGACGTTGGCGATTCACGTGCTGTTGAGTTGGTTGGTGGTGTACAAGGTGGGGTTGGGTTTGTTAGGAGCGTCGTTGGTGTTGAGCTTTTCGTGGTGGGTGATAGTGGTGGCGCAGTTTGTGTACATTGTGAAGAGTGAGAGGTGTAAGGACACGTGGCGGGGGTTTAGCGTTCAAGCGTTTTCCGGGCTGCCGGAGTTTTTTAAGCTGTCTGCTGCTTCGGCTGTGATGCTGTGTCTTGAGACGTGGTACTTTCAGATTCTTGTTCTGCTTGCTGGCTTGTTGCCTCACCCTGAGTTGGCCCTTGATTCACTTTCTATTTGTACCACGGTGTCTGGATGGGTGTTCATGATCTCAGTAGGATTTAACGCTGCTGCAAGTGTGAGAGTGAGCAACGAGCTAGGAGCTAGGAATCCAAGATCAGCATCATTCTCAGTGGTGGTAGTGACAGTGATATCATTCGTGTTATCAGTGATAATAGCAATAGTGGTTCTATTATTGAGGGATGTCATAAGCTATGTCTTCACCGAAGGAGAAGAGGTTGCTGCTGCTGTCTCTGATCTCTGCCCTCTCCTCGCTCTTTCCATTGTCCTCAACGGCATTCAGCCCGTCTTATCCGGGGTGGCCGTTGGATGTGGATGGCAAACTTTCGTTGCATATGTAAACGTTGGTTGCTACTATGGAGTTGGCATACCATTGGGCTCGGTTCTTGGTTTCTATTTTAAGCTCAGTGCCAAGGGAATATGGATTGGAATGCTCGGTGGCACGGTTTTGCAAACACTTATTTTGATGTGGGTCACATTTCGAACGGATTGGACTAAAGAGGTTGAAGAAGCATCAAAGAGGTTGAATAAGTGGGACGAAAATAAGGAGCCACTTCTGAAGAACTGA 1536 0.4603 MGSASENLPSTPPSPCLSSFSSSKHDFHESNNGELERILSDTSVPRSKRLGAATWIEFKLLFYLAAPAVIVYVINYVMSMSTQIFSGHLGNLELAASSLGNNGIQIFAYGLMLGMGSAVETLCGQAYGAQKFEMLGVYLQRSTILLSIAGIVLTFIYIFSEPILVFLGESPRIASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVAPSAYISTATLAIHVLLSWLVVYKVGLGLLGASLVLSFSWWVIVVAQFVYIVKSERCKDTWRGFSVQAFSGLPEFFKLSAASAVMLCLETWYFQILVLLAGLLPHPELALDSLSICTTVSGWVFMISVGFNAAASVRVSNELGARNPRSASFSVVVVTVISFVLSVIIAIVVLLLRDVISYVFTEGEEVAAAVSDLCPLLALSIVLNGIQPVLSGVAVGCGWQTFVAYVNVGCYYGVGIPLGSVLGFYFKLSAKGIWIGMLGGTVLQTLILMWVTFRTDWTKEVEEASKRLNKWDENKEPLLKN* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1411 511 CDD MATE_eukaryotic 57 493 IPR045069 GO:0042910|GO:1990961
Ahy13g1411 511 Coils Coil 484 504 - -
Ahy13g1411 511 MobiDBLite consensus disorder prediction 1 26 - -
Ahy13g1411 511 Pfam MatE 289 449 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ahy13g1411 511 Pfam MatE 67 227 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ahy13g1411 511 MobiDBLite consensus disorder prediction 1 28 - -
Ahy13g1411 511 PANTHER MULTIDRUG RESISTANCE PROTEIN 12 498 - -
Ahy13g1411 511 PANTHER PROTEIN DETOXIFICATION 12 498 - -
Ahy13g1411 511 TIGRFAM matE: MATE efflux family protein 67 464 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1411 Ahy-Chr13 17838483 17855766 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g1411 K03327 - gmx:100801718 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g1411 13 17838483 17855766 Ahy13g1411 13 17838483 17855766 ECH
Ahy18g0735 18 8068776 8073266 Ahy13g1411 13 17838483 17855766 PCT
Ahy8g1518 8 31949926 31954229 Ahy13g1411 13 17838483 17855766 PCT
Ahy13g1411 13 17838483 17855766 Ahy18g0735 18 8068776 8073266 PCT
Ahy13g1411 13 17838483 17855766 Ahy8g1518 8 31949926 31954229 PCT