Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g3006 ATGTCTTCAATCTTCACTAGATTTTGGGGATCACAAGAACAAGAACATTTACATCAGTCATCTTCAATGAGCTACACAAGTTCTTCTTCTTCTTCTAGGCCTTCACATGTTCCACCTGCTGAAGCTGCTGGAGTTATTGCTGCTTTGAAGGACAAAAGTGTTGATGAGTTGCGGAAAATTTCGTCCGAGAAAGATGCTTATCAACGGTTTTTACAGTCGCTTGAACAGGTCAAGATTCAAAATAATCTGAAAGATGAACTATGCAAGGAGAATATGCTGCTTGTTGATGAAAATCTACAAAAGGAACCTCGTGTTTTGGGACTAAAAAATCAGTGTAGAATCATTCGGACAAGTGAACTAGCTGCTGCACAAGAGAAACTAAAGGAGCTTGAGAAACAGAAAGAAGAAATGTTGAAGTTGAGTTCCCTACCATTCCTTCTTCATAGGATTCAAGGGGCTATGAACAAGACTGAAGAAGAATCAGAAGATCTGCACCAACAATTACTTGATAAAGAGATTGATCTTGGAGCTTTTCTGCAGAAATACAAGAAGCTACGTATTGCTTATCACAGTAAAAATCTGATACATCTTGCAGCTAGAACATCAAATATTTGA 615 0.3805 MSSIFTRFWGSQEQEHLHQSSSMSYTSSSSSSRPSHVPPAEAAGVIAALKDKSVDELRKISSEKDAYQRFLQSLEQVKIQNNLKDELCKENMLLVDENLQKEPRVLGLKNQCRIIRTSELAAAQEKLKELEKQKEEMLKLSSLPFLLHRIQGAMNKTEEESEDLHQQLLDKEIDLGAFLQKYKKLRIAYHSKNLIHLAARTSNI* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g3006 204 Coils Coil 147 174 - -
Ahy12g3006 204 PANTHER VACUOLAR PROTEIN-SORTING-ASSOCIATED PROTEIN 37 HOMOLOG 2 17 204 - -
Ahy12g3006 204 SUPERFAMILY Endosomal sorting complex assembly domain 145 192 IPR037202 -
Ahy12g3006 204 MobiDBLite consensus disorder prediction 1 36 - -
Ahy12g3006 204 MobiDBLite consensus disorder prediction 1 42 - -
Ahy12g3006 204 Gene3D Helix hairpin bin 129 197 IPR029012 -
Ahy12g3006 204 PANTHER WILLIAMS-BEUREN SYNDROME CRITICAL REGION PROTEIN-RELATED 17 204 - -
Ahy12g3006 204 ProSiteProfiles VPS37 C-terminal domain profile. 124 204 IPR009851 -
Ahy12g3006 204 Coils Coil 113 143 - -
Ahy12g3006 204 Pfam Modifier of rudimentary (Mod(r)) protein 50 194 IPR009851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g3006 Ahy-Chr12 119651814 119653868 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g3006 K12185 - gmx:100305851 233.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g3006 12 119651814 119653868 Ahy12g3006 12 119651814 119653868 ECH
Ahy12g3006 12 119651814 119653868 Ahy2g2591 2 102053889 102055943 hybridization
Ahy6g1533 6 51668918 51672098 Ahy12g3006 12 119651814 119653868 PCT
Ahy12g3006 12 119651814 119653868 Ahy6g1533 6 51668918 51672098 PCT