Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2391 ATGTTGCAACCTTTCACACCCTTCTTTTCCTTTCTTGATAGAAAATCCAAATCACTCTTCAACCTCCCAAAACCAGCACCGAGTAGTAGTTGCTGTTCATGCTGGTGCTGGAGAAGACAGCGACCCAGAAGAAAATTCTCACCAAGTTTTGATTTTGATGAATTCTCAGCGTCTTTCCTAGACATGAATCTGTCAAGGCAGTTCCAACAAGTGTTCAAGCTCATTGATTCCAATGGTGATGGAAAAATCTCAACCACTGAGCTCAGTGAAACTCTTCTATGTCTTGGATACAACAAGTGCATGGCTAAAAAAGAAGCTGAGAGAATGGTGAGAGCTTTGGACTTTAATGGAGATGGGTTTGTTGACTTTGATGAATTCATGGTTGTGATGAGAGAAGGAATAGCAACAACAGAAGAAGAAGAAGAAGAAGAAGGTGGCAAGAACAATAACAATAATAGTATTGATCAAGATGAGTATCTTATGGATGCTTTTCATGTGTTTGATTCTGATAAGAATGGATTAATCTCTGCTAAGGAATTGAGGAGAGTTTTGGTTAATCTTGGGTGTGATCGTTGCAGCATCAGAGAGTGTAAGCGTATGATCAAAAGTGTTGACAAGAATGGTGATGGGTTTGTTGATTTTGATGAATTTAGATCCATGATGAAAAAGGGACTTTCCAAATCCAAACAAAATTAG 696 0.3865 MLQPFTPFFSFLDRKSKSLFNLPKPAPSSSCCSCWCWRRQRPRRKFSPSFDFDEFSASFLDMNLSRQFQQVFKLIDSNGDGKISTTELSETLLCLGYNKCMAKKEAERMVRALDFNGDGFVDFDEFMVVMREGIATTEEEEEEEGGKNNNNNSIDQDEYLMDAFHVFDSDKNGLISAKELRRVLVNLGCDRCSIRECKRMIKSVDKNGDGFVDFDEFRSMMKKGLSKSKQN* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2391 231 ProSiteProfiles EF-hand calcium-binding domain profile. 155 190 IPR002048 GO:0005509
Ahy12g2391 231 CDD EFh 67 131 IPR002048 GO:0005509
Ahy12g2391 231 PANTHER CALCIUM-BINDING PROTEIN CML25-RELATED 57 227 - -
Ahy12g2391 231 ProSiteProfiles EF-hand calcium-binding domain profile. 101 136 IPR002048 GO:0005509
Ahy12g2391 231 SMART efh_1 105 133 IPR002048 GO:0005509
Ahy12g2391 231 SMART efh_1 159 187 IPR002048 GO:0005509
Ahy12g2391 231 SMART efh_1 196 224 IPR002048 GO:0005509
Ahy12g2391 231 SMART efh_1 67 95 IPR002048 GO:0005509
Ahy12g2391 231 Gene3D - 151 231 - -
Ahy12g2391 231 SUPERFAMILY EF-hand 58 223 IPR011992 -
Ahy12g2391 231 Gene3D - 37 150 - -
Ahy12g2391 231 ProSitePatterns EF-hand calcium-binding domain. 76 88 IPR018247 -
Ahy12g2391 231 ProSitePatterns S-100/ICaBP type calcium binding protein signature. 109 130 IPR001751 -
Ahy12g2391 231 ProSiteProfiles EF-hand calcium-binding domain profile. 192 227 IPR002048 GO:0005509
Ahy12g2391 231 ProSiteProfiles EF-hand calcium-binding domain profile. 63 98 IPR002048 GO:0005509
Ahy12g2391 231 PANTHER CALCIUM BINDING PROTEIN 57 227 - -
Ahy12g2391 231 CDD EFh 159 222 IPR002048 GO:0005509
Ahy12g2391 231 ProSitePatterns EF-hand calcium-binding domain. 168 180 IPR018247 -
Ahy12g2391 231 ProSitePatterns EF-hand calcium-binding domain. 114 126 IPR018247 -
Ahy12g2391 231 Pfam EF-hand domain pair 67 131 IPR002048 GO:0005509
Ahy12g2391 231 Pfam EF-hand domain pair 158 222 IPR002048 GO:0005509
Ahy12g2391 231 ProSitePatterns EF-hand calcium-binding domain. 205 217 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2391 Ahy-Chr12 112067072 112068123 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g2391 160 228 EF-hand Containing Proteins AT1G24620 33.333 8.61e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g2391 - - aip:107628548 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g2391 12 112067072 112068123 Ahy2g2065 2 95930060 95931009 hybridization