Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0942 ATGGCCTTCGTTCGCGCACCGTCACCGTTTCTTCTCGTCCTCGTTCTAGCTCTCTCGATCTTCGCCGCCATTACCGCCACCACCACTATTCCCCAACCGATCTCCGATCATCACCGATCCGCCGCATTGAACCTCTTCGCCCCTTCTCACGGATCGTTTCCCAGTTTGCAGGATGCGTATGAGGCTCTCAGGGTTTTTGAGATTCTAGGGATTGAAGAGAAGCACCGTGTGAGCACGGACACATGTAAGGTGGTGTTGGAAAATCTGAGTTCGTTGTCATCGTCTCTTAAGGATTTGTTCTATGCTTTGAAAGTTAATGGCATATTGAAATGCAAGGTTAATGGGGAGGTTTTCGAGGGTATTGCTTCAAGACTCAAGGCTTCTATCAGCGATGCAAGTCCTTTGCCTGACCTATACTACTCAATAGGAGGTTTGGTTCTCATAAAGGATCAGGATTCAAATGTTGATGTTCTTCTTGCTGATGCCACGGGAACTTTTCAGTCAATCAAGGCTCAAAGCCAAAGTGATGGAAAATGGCGCTACAGTTCTGACAAAACGGAATCCAGTGCCTATGCTGCTGGATTAGCATTTGAAGCCCTTGCTGGAGTGATTTCACTAGCATCATCTGAAATTGACCAGTCTAAGGTCAATACTGTAAAACATGATATACTGAAGCTTTTTGACAGCATTGAGAAAAATGATGATGGAAGCTTCTATTTTGATGGGGAAACTGTTGGTGGGCATGAGCATCAGGATTCCCTTTCCACGACCTCTTCAGTTGTTCGAGGGGTTACTGCATTTGCTGCTGCAGTTTCTGGAGAAATAAATCTTCCAGGGGATAAAACATTGGGTTTAGCAAAGTTTCTCTTGGGCATTGGAGTCCCAGGAGATGCTAAGGACTTCTTCAATCAAGTTGAATCGTTAGCTTTTCTGGAGAGCAAAAGGGTTACCATCCCATTGATATTGTCACTTCCTGAAACGGTCTATTCATTAACCACGAAAGGCCAACTTAAGGTTCGTGTGAGTACAGCACTTGGTTCAGCCGCACCACCTCTAGTAGTTAAGCTTGTCCGAGCTTTCAGTTCTGGTGCAAAAGATTCAAGTATTATTGAGAGCAAGGAACTCCAGTATGACAAAAGAAGTGGACTTCATGTCTTGGATGGTTTCACAAATAATGTGGATGTGGGAACATATGTGTTTGTTTTTGAGATTGTGCTTCATGACACTCACAGTAAACAAGTTTATGCTACCGGCGGCCAAATTCACATGCCTATATATGTTACTGGAATTATTGCAGTCAGCAATGCAGAAATCGGAGTTCTGGGTGACCTTGGAAGTGTCCAGACAAAAAAAGCGCTAGATCTTGCCGGAAATGATGTTGTTTCATTTTCAGCTAACCATCTGCAGAAGTTGCGGTTTTCTTTCCAATTGGCAACTCCTCACGGTCATGTTTTTAAGCCACATCAGGCAATTTTGAAGTTTAGGCATGAGATAAAGGTAGAACACGTCTTTGTGATTGGAAATGTTGGCAAGAAGTTTGAGATCACTCTGGATTTTCTTGGCCTGGTGGAGAAACTGTTCTATCTCTCAGGCAAATATGATATTGAGCTGACTGTTGGTGATGCTGCCATGGAAAACTCTTTCATACGGTTGCTTGGCCATGTCAAATTAGATCTTCCGGAAGCACCTGAGAAGGCAGCCCAACCTCCTGCACCCCCAGTTGACCCGTACTCAAGATATGGGCCCAAAACAGAGATAACTCACTTATTCAGGACCCCTGAAAAGCGACCACCTCAGAATCTCTCTATTACTTTCTTGGGTTTGATCCTTTTGCCATTCCTTGGCTTTTTAATTGGGTTATTACGTTTGGGGGTGAACCTGAAGAATTTCCCCAGTTCAACAGTACCTGCTGCATTTGCCATGCTGTTCCAACTCAGTATTGCCGCAGTGCTGTTGCTTTATGTACTTTTCTGGTTGAAGCTGGACCTGTTCACTACTCTCAAAACACTTGGCTTTTTGGGAGCTTTCTTGATGTTTTCCGGGCACCGGATTCTCTCCTATCTTGCTTCGACATCAACCAAGTTGAAATCTGCATGA 2097 0.444 MAFVRAPSPFLLVLVLALSIFAAITATTTIPQPISDHHRSAALNLFAPSHGSFPSLQDAYEALRVFEILGIEEKHRVSTDTCKVVLENLSSLSSSLKDLFYALKVNGILKCKVNGEVFEGIASRLKASISDASPLPDLYYSIGGLVLIKDQDSNVDVLLADATGTFQSIKAQSQSDGKWRYSSDKTESSAYAAGLAFEALAGVISLASSEIDQSKVNTVKHDILKLFDSIEKNDDGSFYFDGETVGGHEHQDSLSTTSSVVRGVTAFAAAVSGEINLPGDKTLGLAKFLLGIGVPGDAKDFFNQVESLAFLESKRVTIPLILSLPETVYSLTTKGQLKVRVSTALGSAAPPLVVKLVRAFSSGAKDSSIIESKELQYDKRSGLHVLDGFTNNVDVGTYVFVFEIVLHDTHSKQVYATGGQIHMPIYVTGIIAVSNAEIGVLGDLGSVQTKKALDLAGNDVVSFSANHLQKLRFSFQLATPHGHVFKPHQAILKFRHEIKVEHVFVIGNVGKKFEITLDFLGLVEKLFYLSGKYDIELTVGDAAMENSFIRLLGHVKLDLPEAPEKAAQPPAPPVDPYSRYGPKTEITHLFRTPEKRPPQNLSITFLGLILLPFLGFLIGLLRLGVNLKNFPSSTVPAAFAMLFQLSIAAVLLLYVLFWLKLDLFTTLKTLGFLGAFLMFSGHRILSYLASTSTKLKSA* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0942 698 Pfam Oligosaccharyltransferase subunit Ribophorin II 15 690 IPR008814 GO:0006487|GO:0008250|GO:0016021
Ahy12g0942 698 PANTHER RIBOPHORIN II 14 698 IPR008814 GO:0006487|GO:0008250|GO:0016021
Ahy12g0942 698 PANTHER DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT 2 14 698 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0942 Ahy-Chr12 19677371 19685104 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0942 K12667 - gmx:100806815 942.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0942 12 19677371 19685104 Ahy12g0942 12 19677371 19685104 ECH
Ahy12g0942 12 19677371 19685104 Ahy2g0812 2 15398851 15406683 hybridization
Ahy16g1373 16 27358413 27366838 Ahy12g0942 12 19677371 19685104 PCT
Ahy6g0085 6 1156018 1163761 Ahy12g0942 12 19677371 19685104 PCT
Ahy12g0942 12 19677371 19685104 Ahy16g1373 16 27358413 27366838 PCT
Ahy12g0942 12 19677371 19685104 Ahy6g0085 6 1156018 1163761 PCT