Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0800 ATGATGATGGCACAACATGGCAATAATAATCTAACACTAACTTCACCTTATCAATGGATGATGAAGTTGAAGCATAAATCAAAATCTCCCTTTGTAGTTGGAGTTCTTGCAAGGCCAGCTGAGAATAATGCTCAAGAAACTAATGTCTACAAAGATAATTGGTTTGATCACTTAGCTATAAACCATTTATCAAAAAGTGTTCAAGCATCAACAGGACACAGTAATGGAAAGAGTGGATATGAGAGCCTTGTAGAAGCAGCGATGGTGGCTTATAAGGAATTTGATTCTAATGAACAGAAAGAAGTTATCATTCAAGCACTTGATAGAGCATTTCCAAGGCCAATACTTATGTTGATAAGGACAATGCTACCACCATCTAAATTTGCAAGGGAATATTTTGCTGCTTTTACCACTTTGTTCTTTGCTTGGTTGGTCGGACCCTCCGAGGTGAGAGAATCAGAGATCAATGGAAGAAGAGAAAAAAATGTAGTCCACATAAAGAAATGCAGATTTCTGGAGAAGACAAATTGCGTAGGAATGTGCATTAATCTCTGCAAGATGCCATCTCAATCTTTTATAAAAGATTCTTTTGGTATGCCAGTAAACATGGTTCCTAATTTTGATGACATGAGTTGTGAGATGATATTTGGCCAAGAACCCCCACCATCAACTGATGACCCAGCATTCAAGCAACCTTGTTATAGACTATGCAAGACAAAGCAAAATCATGGAATGAATTGCCTCAGTTAA 750 0.3747 MMMAQHGNNNLTLTSPYQWMMKLKHKSKSPFVVGVLARPAENNAQETNVYKDNWFDHLAINHLSKSVQASTGHSNGKSGYESLVEAAMVAYKEFDSNEQKEVIIQALDRAFPRPILMLIRTMLPPSKFAREYFAAFTTLFFAWLVGPSEVRESEINGRREKNVVHIKKCRFLEKTNCVGMCINLCKMPSQSFIKDSFGMPVNMVPNFDDMSCEMIFGQEPPPSTDDPAFKQPCYRLCKTKQNHGMNCLS* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0800 249 Pfam Beta-carotene isomerase D27-like, C-terminal 143 224 IPR025114 GO:0005506
Ahy12g0800 249 PANTHER BETA-CAROTENE ISOMERASE D27 28 246 IPR038938 -
Ahy12g0800 249 PANTHER BETA-CAROTENE ISOMERASE D27, CHLOROPLASTIC 28 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0800 Ahy-Chr12 14436445 14450360 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0800 K17911 - gmx:100782912 339.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0800 12 14436445 14450360 Ahy2g0671 2 10968612 10985202 hybridization
Ahy16g0171 16 1806454 1817364 Ahy12g0800 12 14436445 14450360 PCT
Ahy6g1154 6 16841449 16855687 Ahy12g0800 12 14436445 14450360 PCT
Ahy12g0800 12 14436445 14450360 Ahy16g0171 16 1806454 1817364 PCT
Ahy12g0800 12 14436445 14450360 Ahy6g1154 6 16841449 16855687 PCT