Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0081 ATGAGGAGGCAGAGATTTAGTGTGGAGAGCGGCATTGTTAGATCGGAGAGGTCGCGCGTCGAGAGGTCTCATAGCAGAGATAAATTCCGTAATCTCCACCATCGAGTAAACACGCGCCACTCCAGGGTCACTGCAGTAGGAGTTCTTGCCAGAGCTGGAGGAGGGAGTGTGTCGGAAAAGACGGTGCCGCCATGGGAGGGCGCCGGAGAAGATGGTGTCGAAGCTGCCATGGCCGAGTGGAGAGGAGAAGGAGTTGGTGGCGCGACGAAAGAACTCAAAGCTTTTGTTCCAATCCCTAATGAACCCAACTTCAGGGACCCTGAAATTGTTCATTTGTTTTGTGCTAAAGCCCTCAAAGTTGCTGCTATAAGGGCTTTTCTCCCTGAAGGGAAACAGTTGCATGCCCATTTGATAAAGTTTGGTTTTTGTCATGTTCTGTCATTGCAAAATCAGTTCTTGAGTATTTACCTTAAATGCAAGGAAACCAAAGATGCACTTAAACTGTTTGATGAATTGCCTGGGAGAAATGTGGTCTCGTGGAATATTGTGATCCGTGGCATTGTTGGATGTGGAAATGAAAATGACTTGAATCCTCATCTGGGGTTTTCTTATTTCAAGCGGATGTTGTTCGAAAAGGTGGCTCCGGATGATATAACATTGAATGCTTTGATTGGTGTGTGTGCAAAGCTTCATGATATCGAAATTGGAGTACAACTGCACTGTTTTGCAATGAAAAGAGGACTTGATTTGGATTGTTTTGTAGGTAGTGCTTTGGTTGATTTTTATGCAAAATTTGGTTTGGTTGAGAATTCAAGGAAGGTTTTTTGTGCTGTTACACATAGAGATTTGGTTATGTTGAATGTCATGATTTCTTGTTATGCCCTGAATTGTTTACCAGAAGAGGCCTTTAGCATTTTCAACTCAATGAGATTGGATGGTGCTAATGGCGACGAATTCACTTTTAGCTGCCTGCTAAGTATATGTGATATTTTAGAATATTATGATTTTGGAAAGCAAGCTCATAGTCTTATTCTGAAACTGTCACTTGAATCCGATATTCTAGTGGCGAGTGCATTAATCAATATGTACGCAAAAAATGAAGATGTCATTGATGCAAAGAGAGTGTTTGACAAGATGGCGATTCGAAATGTTGTGGCATGGAATACCATGATTGTTGGGTGTGGAAATAGTGGCAAAGTGATTGATGTTATGAAGATTCTCAGAGATATGTTACTCGAAGGAATTTTCCCCGATGAACTCACTATTTCCAGCGTTCTTAGCTCGTGTGGCTATGCTTCTGCCATAACTGAAACTCAGCAAGCTCATGCCTTAGCAGTTAAGCTGTCATTTCAAGAATTTGTATCTGTTTCCAATTCTTTGATTACTGCATACTCCAAGTGTGGTAACATAACTAATGCATTCAAATGCTTCAGATTGATGTTAGAACCTGATCTTGTTACATACACTTCATTGATAAATGCATATGCATTCCATGGTCTTGGCAAAGAAGCAACTGAGATGTTTGAGAAGATGATATCTTGCGGCATAAAACCTGACCGGATTTCTTTTCTTGGCATTCTCTCTGCTTGTGTGCATTGTGGATTCGTGAACGCAGGACTGCACTACTTCAAATTAATGACAGATGTGTATCGTATTATTCCTGATTCAGATCACTATACTTGCCTTATTGATCTCCTTGGAAGACATGGTTACATAAACGAAGCCTTTGAATTCTTGAAATCAATTCCAATTCAAGCTGAATCGAACATGTTAGGAGCATTCATTGGGTCTTGTAAACTGCATGAAAATATAGAACTGGCTAAATTGGCAGCAGGAAAGCTTTTTGCAATAGTTCCAGAGAAGATTGTGAACTATGCTTTCGAAAAACCATGA 1893 0.4078 MRRQRFSVESGIVRSERSRVERSHSRDKFRNLHHRVNTRHSRVTAVGVLARAGGGSVSEKTVPPWEGAGEDGVEAAMAEWRGEGVGGATKELKAFVPIPNEPNFRDPEIVHLFCAKALKVAAIRAFLPEGKQLHAHLIKFGFCHVLSLQNQFLSIYLKCKETKDALKLFDELPGRNVVSWNIVIRGIVGCGNENDLNPHLGFSYFKRMLFEKVAPDDITLNALIGVCAKLHDIEIGVQLHCFAMKRGLDLDCFVGSALVDFYAKFGLVENSRKVFCAVTHRDLVMLNVMISCYALNCLPEEAFSIFNSMRLDGANGDEFTFSCLLSICDILEYYDFGKQAHSLILKLSLESDILVASALINMYAKNEDVIDAKRVFDKMAIRNVVAWNTMIVGCGNSGKVIDVMKILRDMLLEGIFPDELTISSVLSSCGYASAITETQQAHALAVKLSFQEFVSVSNSLITAYSKCGNITNAFKCFRLMLEPDLVTYTSLINAYAFHGLGKEATEMFEKMISCGIKPDRISFLGILSACVHCGFVNAGLHYFKLMTDVYRIIPDSDHYTCLIDLLGRHGYINEAFEFLKSIPIQAESNMLGAFIGSCKLHENIELAKLAAGKLFAIVPEKIVNYAFEKP* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0081 630 TIGRFAM PPR: pentatricopeptide repeat domain 385 419 IPR002885 -
Ahy12g0081 630 TIGRFAM PPR: pentatricopeptide repeat domain 285 313 IPR002885 -
Ahy12g0081 630 TIGRFAM PPR: pentatricopeptide repeat domain 486 519 IPR002885 -
Ahy12g0081 630 Gene3D Tetratricopeptide repeat domain 232 335 IPR011990 GO:0005515
Ahy12g0081 630 Gene3D Tetratricopeptide repeat domain 337 445 IPR011990 GO:0005515
Ahy12g0081 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 484 518 IPR002885 -
Ahy12g0081 630 Pfam PPR repeat family 483 531 IPR002885 -
Ahy12g0081 630 Pfam PPR repeat family 382 429 IPR002885 -
Ahy12g0081 630 PANTHER OS07G0259400 PROTEIN 102 626 - -
Ahy12g0081 630 PANTHER OS07G0578800 PROTEIN-RELATED 102 626 IPR045215 GO:0003723|GO:0009451
Ahy12g0081 630 Pfam PPR repeat 558 581 IPR002885 -
Ahy12g0081 630 Pfam PPR repeat 152 176 IPR002885 -
Ahy12g0081 630 Pfam PPR repeat 458 482 IPR002885 -
Ahy12g0081 630 Pfam PPR repeat 284 313 IPR002885 -
Ahy12g0081 630 Pfam PPR repeat 357 380 IPR002885 -
Ahy12g0081 630 Gene3D Tetratricopeptide repeat domain 454 621 IPR011990 GO:0005515
Ahy12g0081 630 Gene3D Tetratricopeptide repeat domain 109 231 IPR011990 GO:0005515
Ahy12g0081 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0081 Ahy-Chr12 1830251 1834058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0081 120 625 Glycoside Hydrolase AT3G49170 32.115 5.50e-83 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0081 - - gmx:100778378 805.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0081 12 1830251 1834058 Ahy2g0044 2 470174 474374 hybridization