Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g1787 ATGATGGAGCTCCACAGGTTCAGCAGCACAGGTTCTTCATCTGATTACTCCAACCACCATAACCAAACCTCTTTATCCTCACAACCCAGCTTGGCTTCAGTACCTTCTCTTAACAAGAACTACCATTATTCTTGTTCTAATTATTCAACCGCCTCATACAACTGCATCGCAACCCTAAAAGGACACAACTACTACCCATCCTCCTTAACCCTCTCCGCTAAATTCCTCTACAGTGGCTCCTCCGATAGAGAAATTAGGTCATGGTCCAAACAATCATTATTAACTACCACTAATAATATAGTCCTTGCTGGGAAAGGTGCAGTCAAGTCTCTAGTTGTTCACTCCGACAAGCTCTTTAGTGCTCACCAAGATAACAAAATTAGGGTTTGGAAGATCACCAACAATATCAACAACCACCACGACCATGAGCTTCAGTACACGCGTTTGGCCACGCTTCCAACGCTCAGCGACCGCGTCTCGAAGATACTACTCCCCAAAAACCACGTTAGAATCCGGAGGCACAAAAGGTCCACGTGGGTTCACCACGTAGACGCAGTGTCTTGTCTCGCCCTGTCCCATGACGGAGCCTTGCTATACTCTGTCTCATGGGACAGGACGATCAAGATTTGGCGAACCAGAGACTTTGCGTGTTTGGAATCAGTGATGAATGCACACGATGATGCCATCAACGCAGTCGCAGTTTCCAACGATGGACGAGTCTACACAGGATCGGCGGACAAAAGAATCAAGGTTTGGAAGAAGAAGAAAGGCGACGGCCAAGGAGTAGTGGGAGAGAAAAGCAAAAGCAAAAACAAACACTACCTTGTGGACACGTTGGAGAAACACAAGTCTGGGATCAACGCTTTGGCGCTTAACGGCGACGGTTCGTTACTATATTCCGGGGCATGTGATAGATCAATACTGTTATGGGCGAGGAAGGAAGAAGACAAAGAAGAAGAAGGTGGTGATGGAAAAATGGTGGTGGTGGGTGCGTTAAGGGGGCATGGTAGGTCTATACTTTGCTTGGTGGTGGTGATGGATTTTGTTGTGAGTGGTTCAGAGGACAAAACGATTCGTGTTTGGAGGGGTTTTGGCGGGAGAGAGTATAGTTGTGTGGCGGTTTTGGAAGGACATAGAGGACCAATTAAGAGCCTCACCGCCATGGTTGATCATAACCATGATGATCCTTCCCAAGCATCGATGGTTGTCTATAGTGGCAGTTTAGACTGTGACATTAAGGTTTGGAAGGTTTTTGTTCCTCTTCTCTGA 1269 0.4689 MMELHRFSSTGSSSDYSNHHNQTSLSSQPSLASVPSLNKNYHYSCSNYSTASYNCIATLKGHNYYPSSLTLSAKFLYSGSSDREIRSWSKQSLLTTTNNIVLAGKGAVKSLVVHSDKLFSAHQDNKIRVWKITNNINNHHDHELQYTRLATLPTLSDRVSKILLPKNHVRIRRHKRSTWVHHVDAVSCLALSHDGALLYSVSWDRTIKIWRTRDFACLESVMNAHDDAINAVAVSNDGRVYTGSADKRIKVWKKKKGDGQGVVGEKSKSKNKHYLVDTLEKHKSGINALALNGDGSLLYSGACDRSILLWARKEEDKEEEGGDGKMVVVGALRGHGRSILCLVVVMDFVVSGSEDKTIRVWRGFGGREYSCVAVLEGHRGPIKSLTAMVDHNHDDPSQASMVVYSGSLDCDIKVWKVFVPLL* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g1787 422 ProSiteProfiles Trp-Asp (WD) repeats profile. 279 310 IPR001680 GO:0005515
Ahy11g1787 422 ProSiteProfiles Trp-Asp (WD) repeats profile. 179 220 IPR001680 GO:0005515
Ahy11g1787 422 ProSiteProfiles Trp-Asp (WD) repeats profile. 222 253 IPR001680 GO:0005515
Ahy11g1787 422 PRINTS G protein beta WD-40 repeat signature 349 363 IPR020472 -
Ahy11g1787 422 PRINTS G protein beta WD-40 repeat signature 198 212 IPR020472 -
Ahy11g1787 422 PRINTS G protein beta WD-40 repeat signature 118 132 IPR020472 -
Ahy11g1787 422 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 279 310 - -
Ahy11g1787 422 Gene3D - 9 169 IPR015943 GO:0005515
Ahy11g1787 422 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 9 420 - -
Ahy11g1787 422 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 9 420 IPR045182 -
Ahy11g1787 422 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 332 361 - -
Ahy11g1787 422 SMART WD40_4 215 253 IPR001680 GO:0005515
Ahy11g1787 422 SMART WD40_4 95 131 IPR001680 GO:0005515
Ahy11g1787 422 SMART WD40_4 325 362 IPR001680 GO:0005515
Ahy11g1787 422 SMART WD40_4 368 416 IPR001680 GO:0005515
Ahy11g1787 422 SMART WD40_4 272 311 IPR001680 GO:0005515
Ahy11g1787 422 SMART WD40_4 52 89 IPR001680 GO:0005515
Ahy11g1787 422 SMART WD40_4 172 211 IPR001680 GO:0005515
Ahy11g1787 422 SUPERFAMILY WD40 repeat-like 48 417 IPR036322 GO:0005515
Ahy11g1787 422 MobiDBLite consensus disorder prediction 1 31 - -
Ahy11g1787 422 Gene3D - 262 418 IPR015943 GO:0005515
Ahy11g1787 422 Gene3D - 170 261 IPR015943 GO:0005515
Ahy11g1787 422 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 179 210 - -
Ahy11g1787 422 CDD WD40 55 416 - -
Ahy11g1787 422 Pfam WD domain, G-beta repeat 276 310 IPR001680 GO:0005515
Ahy11g1787 422 Pfam WD domain, G-beta repeat 54 89 IPR001680 GO:0005515
Ahy11g1787 422 Pfam WD domain, G-beta repeat 179 210 IPR001680 GO:0005515
Ahy11g1787 422 Pfam WD domain, G-beta repeat 370 416 IPR001680 GO:0005515
Ahy11g1787 422 Pfam WD domain, G-beta repeat 222 253 IPR001680 GO:0005515
Ahy11g1787 422 Pfam WD domain, G-beta repeat 330 361 IPR001680 GO:0005515
Ahy11g1787 422 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 222 253 - -
Ahy11g1787 422 ProSiteProfiles Trp-Asp (WD) repeats profile. 332 361 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g1787 Ahy-Chr11 114658010 114659722 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g1787 218 416 Acyl Lipid Metabolism Gene Families AT3G18860 23.902 9.63e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g1787 - - ahf:112722395 820.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1787 11 114658010 114659722 Ahy11g1787 11 114658010 114659722 ECH
Ahy11g1787 11 114658010 114659722 Ahy1g1705 1 90298701 90300864 hybridization