LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev10g1874	ATGAGTGCTTCTTGGTTTACTGAACTTTCATGCAGTGCAATCATGAGTGATGAAGGAGAAAGGACTTGCCCTCTCTGTGCAGAGGAGATGGACTTGACAGACCAGCAGTTGAAACCATGCAAATGTGGTTATGAGATTTGTGTCTGGTGTTGGCATCATATAATGGAAATGGCTGAGAAGGATGACACCGTGGGGCGATGCCCTGCTTGTCGTTCTCCATATGATAAGGAAAAGATTGTCGGGATGGCTGCAAACTGTGAGAGATTGGTGACTGAAGTTCATATGGAAAGAAAGATGAAGAACCAGAAAGCAAAGTCCAAATCATCTGAAGGACGTAAACAGCTCAGCAGTGTGCGAGTGATTCAGAGGAACCTTGTTTACATAGTGGGATTGCCTCTCGATCTGGCAGATGAAGATCTTCTCCAGCGGCGAGAGTATTTTAGTCAGTATGGGAAGGTCTTAAAAGTGTCAATGTCACGGACAGCAGCTGGTGTTGTTCAGCAGTTTCCAAACAATTCATGTAGTGTATATATTACTTATTCAAAAGAAGAAGAAGCAATTCGTTGTATTCAAAATGTACATGGATTTGTTTTGGAGGGTAGACCTTTAAGGGCTTGTTTTGGAACCACAAAATATTGTCATGCATGGCTCCGAAATATGCCTTGCAGCAATCCAGATTGTCTATATTTGCATGAAATTGGTACTCAAGAAGATAGCTTCACTAAAGATGAGATAATTTCAGCATACACTAGTCGTGTTCAACAAATAACTGGTGTAGCATACAATACGCATCGCCGTTCGGGGAATGTATTGCCTCCTCCAATGGATGATTGCACAGATATTTCTTCTGGAAAACCCATTGTCAAAAATTCTTCAAGTAACTCTGCTAGCATTGTAAGAGGTTCACCTCCAAATGGAAGTTCTGGGAGGCCTGTATCTGTACCTGTTACTGCATGGGGCACACGGGCTACAAATAGTCATCCCACTGCTGCAGGTATAGTGTGTCCAAATGGACTGTCTAAATCCAAATCTCATACAATCAGCAGCACACTACCATTCTCTTCAGCTGTTACAGGGACAATTCAAGCTTCATCACACAATGAAGTGACAAAGAGGCCACTGTCAAGTGATGGAAGTCATAATATGACTCCTAGAGTAACAAATGAATTGTCAAAACCTATTAAACAATACAATAGCATGGATAGTTTGTCTAGTGCAAGTGAAAAAACTTTGGCTTCTGATATTTCTCTTGCACCTGTGAATTTGAACAATCAGTTGTCTTCTGTACAATTAGTAAGAGATAGTGATAGAGGCAATTGTAATACAATGGACACAACTAATTCTGTCGACACCTCTGCACAGTCATGCTGCTCTGAGGAAGCAATTATTGCTCCCCACGAAGAAATTCTGAATGTGTCCTCTGAGTTATCTTCAGTTAACACTCATAGAAATGCCGCAAATGAAAACAGCAGGCCAAGCAAGCCCAGTAGCCCACCTCCTGATTACGTCTTGGTTAAGTCTCCTAAATCTCAAGTATTACAGGCTGACAAATTAAGAGATGCAACAATTACAAATGCAGACGGTGAAGCTGCTGCATCAGAAAATGGTGGTTGCAATTCAAAGGAACTATGTGATTTGATATTGGATTCCCAACCTCGACTAGTACCAGGTTGTGATGAACTGGAAGATGATGTGGCATCTTTTGATAATCAAAGACGCAAAGATCCAGAAGTTGTTTGTCATTCTTATTTGCCTAAGCCAGCAAGTTTCCGTCATGTCTCAAATAGTTCTAGTACCCATCCTCTGCAACACGGTGGACCTTGTACAGTTATGAATGCTGGTTCTCTATCTGCAGATCATAAAGTTGGGGATGACTCTCTATTACATGCATCTAACATTTTATGTAATGGCTACCCTAATAATTTGGTCAGTACTAGCTCCAATGGACTGCTTCATGGTGAAAGAAATGAGCAATTCAGTGAGAGAATAGTTAGCAAAGCTGTTAATACTGATAGTGATGCTTCTATGGATATGGGTGAGAGTAGTATAATTTCAAATATATTGTCCATGGAGTTCGATGCCTGGGATGACTCACTAGCATCACCTCTGAATTTGGCCAAGTTGTTGGGTGAAAACAATGATAAGCGGAATGTTCCATTAAAGAAATCTAGTTCCGTGAAAGTTCAAAGTAATAATAATCAATCAAGATTTTCTTTTGCTAGGCAGGAGGAATCCAAAATTCAAGCTTATGGTGCACATCCATCTTATGATTCCAGTCAACAATATCCAATCAGCCGGTCACTCATCCAGGATTTTGCAGATAGAGACTTGTCTGTGAATAATTTGGGTATTGCAAATGGCTTTGTGGCCCATAACCTTGAGGAATCTGAAAATCTAGGCAGTGGCCATTTTGTTGCTTCTTCTAACAAGCTTTCTGCTGTTTCAAGAGCTCAAATTTCAGCACCACCAGGATTTTCAGTTCCAAGCAGATCACCACCTCCTGGTTTTTCCTCTCATGAGAGGATGGGGCAGGCTTTTGACTCCATCTCAGGGAATTCATTGCTTGATCCTTCTACGTTAATGAGAAATTCATATCAGACACCTTCAACGGGGAATATTGGTGGTGCAGGAGACATTGAATTTATGGATCCTGCTATTTTGGCAGTTGGTAAGGGGAGACTTCAAGGAGCACTAAACACCCCAGCACTAGAAATGCGATCCAATTACCCTCCACAATTAAATTACTTTGAAAATGAGGCCAGACTTCAATTATTGATGCAAAGATCTCTCTCTCCACAACAAAATCTTAGATTTTCTGAAATGGGGAATACTTTTTCTCAGCTTAATGATTCATATGGCATTTCTTCAAGGTTAGATCAGTCACAAGTTAGTTATCTGGCATCATTTCCTCAGTTGTCTCTGCAGCAGTCTAGAAATGCTGTCTTGTCAAATGGGCAATGGAATGGTTGGAATGAGGTGCAGAGTGGAAATAGTCTGGGTATGGCTGAGCTTTTAAGAAATGAAAGACTTGGATTTGACAAGTTTTACAGAGGGTATGATGATTCAAAATATCGGATGCCAAATTCTGGGGATCTCTACAACAGGACATTTGGAATTTAA	3120	0.408	MSASWFTELSCSAIMSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMEMAEKDDTVGRCPACRSPYDKEKIVGMAANCERLVTEVHMERKMKNQKAKSKSSEGRKQLSSVRVIQRNLVYIVGLPLDLADEDLLQRREYFSQYGKVLKVSMSRTAAGVVQQFPNNSCSVYITYSKEEEAIRCIQNVHGFVLEGRPLRACFGTTKYCHAWLRNMPCSNPDCLYLHEIGTQEDSFTKDEIISAYTSRVQQITGVAYNTHRRSGNVLPPPMDDCTDISSGKPIVKNSSSNSASIVRGSPPNGSSGRPVSVPVTAWGTRATNSHPTAAGIVCPNGLSKSKSHTISSTLPFSSAVTGTIQASSHNEVTKRPLSSDGSHNMTPRVTNELSKPIKQYNSMDSLSSASEKTLASDISLAPVNLNNQLSSVQLVRDSDRGNCNTMDTTNSVDTSAQSCCSEEAIIAPHEEILNVSSELSSVNTHRNAANENSRPSKPSSPPPDYVLVKSPKSQVLQADKLRDATITNADGEAAASENGGCNSKELCDLILDSQPRLVPGCDELEDDVASFDNQRRKDPEVVCHSYLPKPASFRHVSNSSSTHPLQHGGPCTVMNAGSLSADHKVGDDSLLHASNILCNGYPNNLVSTSSNGLLHGERNEQFSERIVSKAVNTDSDASMDMGESSIISNILSMEFDAWDDSLASPLNLAKLLGENNDKRNVPLKKSSSVKVQSNNNQSRFSFARQEESKIQAYGAHPSYDSSQQYPISRSLIQDFADRDLSVNNLGIANGFVAHNLEESENLGSGHFVASSNKLSAVSRAQISAPPGFSVPSRSPPPGFSSHERMGQAFDSISGNSLLDPSTLMRNSYQTPSTGNIGGAGDIEFMDPAILAVGKGRLQGALNTPALEMRSNYPPQLNYFENEARLQLLMQRSLSPQQNLRFSEMGNTFSQLNDSYGISSRLDQSQVSYLASFPQLSLQQSRNAVLSNGQWNGWNEVQSGNSLGMAELLRNERLGFDKFYRGYDDSKYRMPNSGDLYNRTFGI*	1040

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev10g1874	1039	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	126	204	IPR000504	GO:0003723
	Aev10g1874	1039	PANTHER	CCR4-NOT TRANSCRIPTION COMPLEX RELATED	10	1039	IPR039780	GO:0004842\|GO:0030014
	Aev10g1874	1039	MobiDBLite	consensus disorder prediction	365	385	-	-
	Aev10g1874	1039	Gene3D	-	125	206	IPR012677	-
	Aev10g1874	1039	Pfam	RING/Ubox like zinc-binding domain	23	75	-	-
	Aev10g1874	1039	ProSiteProfiles	Zinc finger RING-type profile.	23	71	IPR001841	-
	Aev10g1874	1039	MobiDBLite	consensus disorder prediction	476	501	-	-
	Aev10g1874	1039	SUPERFAMILY	RNA-binding domain, RBD	118	204	IPR035979	GO:0003676
	Aev10g1874	1039	SMART	rrm1_1	125	206	IPR000504	GO:0003723
	Aev10g1874	1039	MobiDBLite	consensus disorder prediction	289	311	-	-
	Aev10g1874	1039	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	124	210	IPR000504	GO:0003723
	Aev10g1874	1039	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	13	91	IPR013083	-
	Aev10g1874	1039	CDD	RRM_CNOT4	119	218	IPR034261	-
	Aev10g1874	1039	MobiDBLite	consensus disorder prediction	476	492	-	-
	Aev10g1874	1039	CDD	mRING-HC-C4C4_CNOT4	23	72	IPR039515	-
	Aev10g1874	1039	PANTHER	RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN	10	1039	-	-
	Aev10g1874	1039	SUPERFAMILY	RING/U-box	14	80	-	-
	Aev10g1874	1039	SMART	rrm2_1	125	206	IPR003954	GO:0003676

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev10g1874	Aev-Chr10	20295386	20300963	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev10g1874	K10643		-	gmx:100796804	1496.49

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aev04g3058	04	30297740	30303253	Aev10g1874	10	20295386	20300963	PCT