Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g3058 ATGAGTGACGAAGGAGAAAGGACTTGTCCTCTCTGTGCAGAAGAGATGGATTTGACTGATCAGCAGTTGAAACCTTGCAAATGTGGCTATGAGATTTGTGTCTGGTGCTGGCACCACATAATGGACATGGCCGAGAAGGATGACACAGAAGGGCGATGCCCCGCCTGTCGTTCTCCATATGATAAGGAAAAGATTGTTGGGATGGCTGCAAACTGTGAGAGATTGGTCAGTGAAATCCATATGGAGAAAAAGATGAAGAATCAAAAATCAAAGTCTAAATCATCTGATGGACGGAAGCAGCTCAGCAGTGTGCGAGTGATTCAGCGGAATCTTGTATACATAGTTGGGCTGCCTATCAACTTGGCAGATGAAGATCTTCTTCAGAGGCGAGAGTATTTTGGTCAGTATGGGAAAGTTTTAAAAGTATCGATGTCTCGGACAGCAGCTGGTGTCATTCAGCAGTTTCCGAATGATACGTGCAGTGTATATATTACTTATTCAAGGGAAGAAGAAGCAATTCGTTGTATTCAAAATGTACATGGATTTGTTTTGGATGCTAGACCTTTAAGGGCTTGTTTTGGAACCACAAAATATTGTCATGCATGGCTCCGAAATGCGCCTTGCAGCAATCCTGATTGTTTATATCTGCATGAAGTTGGCTCTCAAGAAGATAGTTTTACAAAAGATGAAATAATTTCAGCATACACTAGAAGTCGAGTTCAGCAAATAACAGGTGCTACAAACAATATGCAACGGAGATCAGGAAATGTATTACCTCCTCCATTAGATGATAGCATGAACAATTCTTCGGAAAAGCCCATTGCAAAAAATGCTTCTAGTAACACTGTTAGCACGTTAAAAGGTTCACCTCCTAATGGAATCCATGGGAGACCTGTAGCTCTTCCTGCTAGTTCTGCCTGGGGAACCCAAGCTACAACTTGTCAGCCCCCTGTTGGTGGAGGTCTATCGTATCCAAATGGGTCATCCAAGCCAAAACCTGATGCAGTCAGCAGCACACTAGATTTTTCTGCAGCAGTTGCTGGCACAACTCAGGCTTCTACATTGACTCAGGCTTCTACATTGCATTGTGATGTGACAAAGAGGCCACCGTCAAGCGATGGGAGTCTTCATACGATGCCTAGAGTGAAAAATGGACTGTTGAGACCTGCTAAACAATACAGTAGCACGGACATTATTGCCAGTGGAGGTGATAAAACTCCGGCTTCTGATGTTTCTCCTGTGTCTATGAAATTGAGCAGCCAGTTGTCTTCTGTGCCATCTTCCCGAGATAGTGATAGAGGCAGTTGTATTACAGTAAACACAACACATTCTACTGACTTAATTGGACAGTCATGCAGCTCTGGTCCTGAGGAAGCAATAACTGCTGCCAATGAAGAGATCCAGAATTTGTCCTGTGAATTATCCTCAATTAACATTGATAAAAATGCTGCAAATGAACAGTACAGTATAACCAATTCTACTAGCTCACCTACTAATGTTGTCTTGATTAAATCCCCGCAAATTCAAGGATCACAACATAATGTTGACAGAATTAGAGATGCAATAGCTACAAATGATAGTGGTAAAGTTGCTCCATCAGATAATGGTGTTTGTAATTCAAAGGAAGAGTGTGATTGGAGAATGGACTCTAAATCTCGAGTGGTGACGGATACTGCTGAAGTGGAGGATGATGTAGCATTTTTTGATAACCAAAGACTGAAGGATCCAGAAGTTGTCTGTCGGTCTTATTTGCCTAAGTCATCAAGTTTTCTTCATGTATCAAACCATTCTAGCCCTCATCTTCTGCAGCACATTGAACCTTGTATTTCTGTAAATGCTGGTTCTGTATCGGCCAATGATAGAGATGGGAATGAATCTCTATTGAATTCATCTAGCATACCATGTAATGGCTACCCAGAGAAATTGGTTGGCAGCAGCTCTTTTGGTGTGTCTCATGATGAAAGGAACAGACAAAGCATAGGAAGATTAGTTAGTGAAGCAGTTAATGCAGGACGAGATGCTACTATGGATAGGGGTGAGAGTAGTATAATTTCAAATATATTGTCCATGGACTTTGATCCATGGGATGACTCGATGGCATCACCACATAATTTAGCTAAGTTGTTGGGTGAGGGTGAGAACACCGAAAACCAGTCTGCCCCATTAAAGAAATCTAGTTCTTGGAAAGTTCAAAGTAACAACCAATCTAGATTCTCTTTTGCTAGGCAGGAGGAATCCAAAATCCAATCCCTTGATGTGCATCCATCTTATGGTCTTAGCCAGCAACAGCCAAGGAATCACCCACTTATGCACGATTTTGCTGAAAGAGACTTTTATATGGATAAGTTGGGCATTACAAATGGTTTTTCTACAAGTAAGTTTGAAGATGCTGAAAATATAGGCAATGGCCAATTTGTTGCTTCAAATAAGCTTTCTGCTATTTCAAGAGCACAAGTATCAGCTCCGCCTGGATTTTCAGCTCCAAGCAGGCCACCACCACCTGGATTTTCTTCTCATGAGAGAGTGGAGCAGACTTTTGACTCTATGTCTGGGAATTCTTTGTTTGATCATACCTCCTTTTTGAGAAATTCATATCAATCACCTCCAGCTGGAAATATTGGCGGTGCAGGGGACATTGAATTTATGGACCCTGCTATTTTGGCGGTTGGTAAGGGGAGACTTCAAGGTGCACTAAACAGCCCATCGCTGGACATGCGATCAAATCTGATGCCACAATTAAATTACTTTGAAAATGAGGCCAGACTTCAGTTATTGATGCAAAGGTCTCTCTCACCGCAGCAAAACCTTAGATTTCCTGATATTGGGAATACCTTTTCTCAGCTTGGTGATTCTTATGGCATTTCCTCGAGGTTAGATCAATCACAAATCAGTAATATAGCCCCATTTCCTCAGCTGTCTCTGCAGCAATCTACAAATACAGTCTTGTCAAATGGCCAATGGGATGGGTGGAATGAGATGCAGAGTGGAAACAATCCTGGAGTGGCTGAGCTTTTGAGAAATGAGAGACTCGGGTTTAACAAGTTTTACTCAGGATATGATGATTCAAAATATCGGTTGCCAAACTCTGGGGATCTTTACAATAGAACATTTGGGATCTAA 3120 0.4189 MSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRSPYDKEKIVGMAANCERLVSEIHMEKKMKNQKSKSKSSDGRKQLSSVRVIQRNLVYIVGLPINLADEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNDTCSVYITYSREEEAIRCIQNVHGFVLDARPLRACFGTTKYCHAWLRNAPCSNPDCLYLHEVGSQEDSFTKDEIISAYTRSRVQQITGATNNMQRRSGNVLPPPLDDSMNNSSEKPIAKNASSNTVSTLKGSPPNGIHGRPVALPASSAWGTQATTCQPPVGGGLSYPNGSSKPKPDAVSSTLDFSAAVAGTTQASTLTQASTLHCDVTKRPPSSDGSLHTMPRVKNGLLRPAKQYSSTDIIASGGDKTPASDVSPVSMKLSSQLSSVPSSRDSDRGSCITVNTTHSTDLIGQSCSSGPEEAITAANEEIQNLSCELSSINIDKNAANEQYSITNSTSSPTNVVLIKSPQIQGSQHNVDRIRDAIATNDSGKVAPSDNGVCNSKEECDWRMDSKSRVVTDTAEVEDDVAFFDNQRLKDPEVVCRSYLPKSSSFLHVSNHSSPHLLQHIEPCISVNAGSVSANDRDGNESLLNSSSIPCNGYPEKLVGSSSFGVSHDERNRQSIGRLVSEAVNAGRDATMDRGESSIISNILSMDFDPWDDSMASPHNLAKLLGEGENTENQSAPLKKSSSWKVQSNNQSRFSFARQEESKIQSLDVHPSYGLSQQQPRNHPLMHDFAERDFYMDKLGITNGFSTSKFEDAENIGNGQFVASNKLSAISRAQVSAPPGFSAPSRPPPPGFSSHERVEQTFDSMSGNSLFDHTSFLRNSYQSPPAGNIGGAGDIEFMDPAILAVGKGRLQGALNSPSLDMRSNLMPQLNYFENEARLQLLMQRSLSPQQNLRFPDIGNTFSQLGDSYGISSRLDQSQISNIAPFPQLSLQQSTNTVLSNGQWDGWNEMQSGNNPGVAELLRNERLGFNKFYSGYDDSKYRLPNSGDLYNRTFGI* 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g3058 1039 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 1039 - -
Aev04g3058 1039 SUPERFAMILY RNA-binding domain, RBD 104 190 IPR035979 GO:0003676
Aev04g3058 1039 MobiDBLite consensus disorder prediction 247 289 - -
Aev04g3058 1039 SUPERFAMILY RING/U-box 3 66 - -
Aev04g3058 1039 MobiDBLite consensus disorder prediction 395 414 - -
Aev04g3058 1039 CDD RRM_CNOT4 105 204 IPR034261 -
Aev04g3058 1039 MobiDBLite consensus disorder prediction 819 840 - -
Aev04g3058 1039 CDD mRING-HC-C4C4_CNOT4 9 58 IPR039515 -
Aev04g3058 1039 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 1 1039 IPR039780 GO:0004842|GO:0030014
Aev04g3058 1039 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 196 IPR000504 GO:0003723
Aev04g3058 1039 MobiDBLite consensus disorder prediction 247 293 - -
Aev04g3058 1039 Gene3D - 111 192 IPR012677 -
Aev04g3058 1039 Coils Coil 460 487 - -
Aev04g3058 1039 Pfam RING/Ubox like zinc-binding domain 9 61 - -
Aev04g3058 1039 ProSiteProfiles Zinc finger RING-type profile. 9 57 IPR001841 -
Aev04g3058 1039 Coils Coil 1039 1039 - -
Aev04g3058 1039 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
Aev04g3058 1039 SMART rrm2_1 111 192 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g3058 Aev-Chr4 30297740 30303253 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g3058 K10643 - gmx:100801880 1543.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g3058 04 30297740 30303253 Aev04g3058 04 30297740 30303253 ECH
Aev04g3058 04 30297740 30303253 Aev10g1874 10 20295386 20300963 PCT