Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g2120 ATGGCTGAGCCTTCCAAGGTCATTCATGTTCGTAACGTGGGGCATGAGATATCTGAAAATGATTTGCTTCAGCTGTTTCAGCCATTTGGAGTCATAACAAAGCTTGTCATGTTGCGTGCAAAAAATCAGGCTCTTGTGCAAATGCAAGATGTTCCTTCAGCAGTTAATGCTTTACAATTTTATGCAAATGTTCAGCCAAGCATAAGGGGGAGGAATGTTTATGTCCAATTTTCCTCTCATCAAGAATTAACATCAATGGATCAAAATCAAGGACGAGGAGATGAGCCAAACCGAATTCTCTTAGTTACGGTTCACCACATGATGTATCCTATAACAGTGGATGTGCTGTATCAAGTATTTTCTCCCCATGGATCTGTGGAAAAGATTGTAACATTTCAGAAGTCAGCTGGCTTTCAGGCCCTCATCCAGTATCATTCACGTCAAAGTGCTGTTGCCGCACGAAGTACACTTCAGGGGCGCAATATATATGATGGTTGCTGTCAGCTGGACATTCAGTTCTCAAACCTTGATGAATTACAAGTGAACTATAATAATGACCGTTCAAGGGACTTCACAAACCCAAATCTTCCTGCAGGAGAGCAGAAAGGCAGACCATCACAACCTGGATATGGTGAACCAGCTGGATTTCCTCAGATGGCCAATGCTGCAGCCATTGCAGCTGCTTTTGGAGGAGGCTTGCCTCCCGGAATAACTGGGACCAACGACAGGTGTACAGTTCTCGTATCAAATCTTAATCCTGATAGAATAGATGAGGATAAGCTGTTCAACTTGTTCTCCATTTATGGGAACATTGTGAGGATTAAACTTCTCCGAAATAAACCAGATCATGCACTTGTCCAGATGGGGGATGGTTTCCAAGCTGAATTGGCAGTACACTTTCTGAAGGGAGCCATGTTGTTTGGGAAGCGATTAGAGGTCAACTTCTCAAAGCATCCACACATTACCCAAGGTGCAGACACGCACGAGTATGCCAATTCAAACCTCAACCGCTTCAATCGTAATGCTGCCAAAAACTACCGTTACTGTTGCTCCCCGACAAAGATTATCCATTTGTCCACACTCCCCCAGGACGTCACCGAAGAGGAAATCGTGAGCCTTCTAGAGGAGCATGGAGCCATAGTCAGCAGCAAGGTCTATGAGATGAATGGGAAGAAACAGGCTCTGGTTCAGTTTGAGACTGAGGAACAGGCTACTGAAGCCCTTGTGTGCAAGCATGCAAGTTCACTTTCTGGTTCAGTAATTCGGATCTCCTTTTCGCAGTTACAGAATATATGA 1296 0.4444 MAEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALVQMQDVPSAVNALQFYANVQPSIRGRNVYVQFSSHQELTSMDQNQGRGDEPNRILLVTVHHMMYPITVDVLYQVFSPHGSVEKIVTFQKSAGFQALIQYHSRQSAVAARSTLQGRNIYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPAGEQKGRPSQPGYGEPAGFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPHITQGADTHEYANSNLNRFNRNAAKNYRYCCSPTKIIHLSTLPQDVTEEEIVSLLEEHGAIVSSKVYEMNGKKQALVQFETEEQATEALVCKHASSLSGSVIRISFSQLQNI* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g2120 431 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 1 430 - -
Aev09g2120 431 Pfam RRM-like domain 95 174 IPR021790 -
Aev09g2120 431 Gene3D - 241 338 IPR012677 -
Aev09g2120 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 354 428 IPR000504 GO:0003723
Aev09g2120 431 CDD RRM1_PTBPH3 6 80 IPR034795 -
Aev09g2120 431 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 1 430 - -
Aev09g2120 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Aev09g2120 431 Gene3D - 1 97 IPR012677 -
Aev09g2120 431 CDD RRM3_PTBPH3 243 318 IPR034797 -
Aev09g2120 431 SUPERFAMILY RNA-binding domain, RBD 3 92 IPR035979 GO:0003676
Aev09g2120 431 Gene3D - 343 428 IPR012677 -
Aev09g2120 431 Gene3D - 98 201 IPR012677 -
Aev09g2120 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 359 421 IPR000504 GO:0003723
Aev09g2120 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 59 IPR000504 GO:0003723
Aev09g2120 431 SUPERFAMILY RNA-binding domain, RBD 95 197 IPR035979 GO:0003676
Aev09g2120 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 227 330 - -
Aev09g2120 431 SUPERFAMILY RNA-binding domain, RBD 242 424 IPR035979 GO:0003676
Aev09g2120 431 CDD RRM4_PTBPH3 347 425 - -
Aev09g2120 431 MobiDBLite consensus disorder prediction 186 213 - -
Aev09g2120 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 244 318 IPR000504 GO:0003723
Aev09g2120 431 SMART rrm1_1 7 76 IPR000504 GO:0003723
Aev09g2120 431 SMART rrm1_1 101 170 IPR000504 GO:0003723
Aev09g2120 431 SMART rrm1_1 355 424 IPR000504 GO:0003723
Aev09g2120 431 SMART rrm1_1 245 314 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g2120 Aev-Chr9 24244783 24248944 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g2120 K14948 - gmx:100819672 794.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev09g2120 09 24244783 24248944 Aev09g2120 09 24244783 24248944 ECH
Aev05g2786 05 28939311 28944108 Aev09g2120 09 24244783 24248944 PCT