Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g2786 ATGGCTGAACCTTCCAAGGTCATCCACGTTCGAAATGTGGGACATGAGATATCTGAAAATGATTTGCTTCAGCTATTTCAGCCTTTTGGAGTCATCACAAAGCTTGTTATGTTGCGTGCCAAAAATCAGGCTCTTCTTCAAATGCAAGATATTCCGTCTGCAGTTAATGCCTTGCAATATTATGCAAATGTTCAGCCAAGCATAAGGGGAAGAAATGTTTATGTCCAGTTCTCATCACATCAAGAACTAACTACAATGGATCAAAGTCAAGGACGAGAAGATGAGCCAAACAGAATTCTCTTAGTTACAGTTCACCACATGCTGTATCCTATAACTGTGGATGTGCTACATCAAGTGTTTTCTCCCCATGGATATGTGGAAAAGATTGTAACGTTTCAGAAGTCAGCTGGTTTTCAGGCCCTCATCCAATATCAATCGCGTCAAAGTGCTGTTACTGCTAGAAGTACACTTCAGGGACGCAATATTTATGATGGTTGTTGCCAGCTAGACATCCAGTTCTCAAACCTTGATGAATTACAAGTAAACTACAACAATGATCGTTCAAGGGACTTCACAAACCCAAATCTTCCTACAGAGCAGAAAGGCCGACCTTCACAACCTGGATATGGCGATGCAGGAGGCATGTATGGCGTTCAAGGTTCTGGAGCCAGAGGAGGTGGATTTTCCCAGATGGCCAATTCTGCAGCAATTGCAGCTGCCTTTGGGGGAGGATTGCCTCCTGGAATTACTGGAACAAATGACAGGTGTACGATTCTCGTTGCGAATCTCAATCCTGATAGTATCGATGAGGATAAACTCTTCAACTTGTTCTCCATTTATGGGAACATTGTCAGAATCAAACTACTCCGAAATAAACCAGATCATGCACTTATCCAAATGGGGGACGGTTTCCAATCTGAATTGGCAGTACACTTTCTGAAGGGAGCCATGCTGTTTGGGAAGCGATTAGAGGTCAACTTCTCCAAGCATCCAAACATAACCCAAGGTGCTGATACACACGAGTATGTGAATTCAAATCTCAATCGATTCAATCGCAATGCTGCTAAAAACTACCGTTATTGCTGCTCACCAACGAAGATGATCCATTTGTCCACCCTACCCCAAGACATCACTGAAGATGATATTGTAAGCCTTGTGGAGGATCATGGAACCATCATCAACAGCAAGGTCTTTGAGATGAATGGAAAAAAGCAGGCTCTTGTTCAGTTTGAGACTGAGGAGCAGGCCACCGAAGCCCTCGTGTGCAAGCATGCAAGCTCACTTTCCGGCTCAGTAATTCGGATCTCCTTTTCCCAGCTGCAGAACATCTGA 1332 0.4384 MAEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDIPSAVNALQYYANVQPSIRGRNVYVQFSSHQELTTMDQSQGREDEPNRILLVTVHHMLYPITVDVLHQVFSPHGYVEKIVTFQKSAGFQALIQYQSRQSAVTARSTLQGRNIYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRPSQPGYGDAGGMYGVQGSGARGGGFSQMANSAAIAAAFGGGLPPGITGTNDRCTILVANLNPDSIDEDKLFNLFSIYGNIVRIKLLRNKPDHALIQMGDGFQSELAVHFLKGAMLFGKRLEVNFSKHPNITQGADTHEYVNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDITEDDIVSLVEDHGTIINSKVFEMNGKKQALVQFETEEQATEALVCKHASSLSGSVIRISFSQLQNI* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g2786 443 SUPERFAMILY RNA-binding domain, RBD 95 197 IPR035979 GO:0003676
Aev05g2786 443 SMART rrm1_1 101 170 IPR000504 GO:0003723
Aev05g2786 443 SMART rrm1_1 7 76 IPR000504 GO:0003723
Aev05g2786 443 SMART rrm1_1 257 326 IPR000504 GO:0003723
Aev05g2786 443 SMART rrm1_1 367 436 IPR000504 GO:0003723
Aev05g2786 443 CDD RRM1_PTBPH3 6 80 IPR034795 -
Aev05g2786 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 371 433 IPR000504 GO:0003723
Aev05g2786 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 59 IPR000504 GO:0003723
Aev05g2786 443 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 1 442 - -
Aev05g2786 443 SUPERFAMILY RNA-binding domain, RBD 254 439 IPR035979 GO:0003676
Aev05g2786 443 TIGRFAM hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family 4 439 IPR006536 GO:0003723|GO:0005634|GO:0006397
Aev05g2786 443 CDD RRM3_PTBPH3 255 330 IPR034797 -
Aev05g2786 443 MobiDBLite consensus disorder prediction 185 215 - -
Aev05g2786 443 Gene3D - 1 97 IPR012677 -
Aev05g2786 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 239 341 - -
Aev05g2786 443 Gene3D - 355 440 IPR012677 -
Aev05g2786 443 MobiDBLite consensus disorder prediction 185 202 - -
Aev05g2786 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 366 440 IPR000504 GO:0003723
Aev05g2786 443 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 1 442 - -
Aev05g2786 443 CDD RRM4_PTBPH3 359 437 - -
Aev05g2786 443 Gene3D - 98 201 IPR012677 -
Aev05g2786 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Aev05g2786 443 Gene3D - 253 348 IPR012677 -
Aev05g2786 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 256 330 IPR000504 GO:0003723
Aev05g2786 443 Pfam RRM-like domain 97 174 IPR021790 -
Aev05g2786 443 SUPERFAMILY RNA-binding domain, RBD 3 91 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g2786 Aev-Chr5 28939311 28944108 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g2786 K14948 - gmx:100798234 827.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g2786 05 28939311 28944108 Aev09g2120 09 24244783 24248944 PCT