Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g0546 ATGAACGGTGGCGATGAGGTCGTCGCAGCTCCCGCGGGTCCACCGCAACCGCTGGAGTGGAAGTTCTCGCAGGTGTTCGGAGAACGTGCGGCAGGGGAAGAAGTCCAAGAAGTGGACATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTCGCTACTGGTGATCGTGGTGGGCGGGTTGTTCTCTTTGAAAGGACAGATGCAAAAGATAATGGTGTACCGAGAAGGGATTTGGAGAGGATGGACTATTCTATTAGTAGGCATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAGCCTGAGTTTGACTATCTTAAGAGCTTGGAAATAGAAGAGAAAATCAATAAAATCAAATGGTGCCAAACAGCCAATGGTGCCCTGTTCCTTTTATCGACAAATGATAAGACCATCAAATTTTGGAAGGTTCAAGAAAAGAAGGTAAAGAAAATTGCTGACATGAATATTGACCCTTCAAAAGCAATGATAAATGGCCCTAGTTCAAGTAGTTCCAGTGTCCCTAGGCCAGTTCTTGCCAATGGAGGCTTGTCAATTCCACCTGGAGGCATACCTTTGCTCAAATTACCGTTGGTAGTTTCCAGCAATGAGACCAGCTTAGTGGCTCGATGTCGCAGAGTATATGCCCATGCTCATGATTATCATATCAATTCTATTTCGAATAACAGCGATGGTGAAACTTTCATATCAGCTGATGATTTGCGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTGAAGCCTGCAAATATGGAGGATCTGACTGAGGTTATAACATCAGCAGAATTTCACCCAACACATTGTAATACATTGGCATATAGCAGTTCAAAGGGTTCAATTCGTCTTGTTGACTTGCGGCAGTCAGCGTTATGTGATTCTCATGCCAAACTATTTGAGGAACACGAGGCCCCGGGCTCCAGATCATTTTTCACAGAGATCATTGCTTCTATCTCAGACATAAAATTTGGGAAGGGCGGAAGATATATACTTAGTCGTGATTATATGACTCTAAAGTTATGGGACATCAACATGGATTCTGGTCCAGTTACGACATTCCAGGTCCACGAGTATTTGAGACCAAGGCTTTGTGATTTATATGAAAATGATTCAATTTTTGATAAGTTTGAGTGTTGTCTGAGTGGTGATGGATTGCGTGTTTCAACGGGTTCTTACAGCAACCTATTCCGCGTGTTTGGTTGTGCCCCTGGCAGTACCGAGGCCACGACTTTGGAAGCCAGTAAAAATCCAATGAGACGGCACGTTCCAACCCCTTCAAGGCCTTCTACTTCCAGATCACTTGGAAATAGTATAACACGAGTTGTACGACGTGGAGCTGAAAGCAGTGGTGTCGATGCAAATGGGAATTCGTTCGATTTCACGACAAAGTTGCTACACTTAGCATGGCATCCTACTGAAAATTCCATTGCTTGTGCTGCTGCAAATAGCTTATATATGTACTATGCTTGA 1515 0.4304 MNGGDEVVAAPAGPPQPLEWKFSQVFGERAAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDAKDNGVPRRDLERMDYSISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANGALFLLSTNDKTIKFWKVQEKKVKKIADMNIDPSKAMINGPSSSSSSVPRPVLANGGLSIPPGGIPLLKLPLVVSSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLVDLRQSALCDSHAKLFEEHEAPGSRSFFTEIIASISDIKFGKGGRYILSRDYMTLKLWDINMDSGPVTTFQVHEYLRPRLCDLYENDSIFDKFECCLSGDGLRVSTGSYSNLFRVFGCAPGSTEATTLEASKNPMRRHVPTPSRPSTSRSLGNSITRVVRRGAESSGVDANGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYYA* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g0546 504 MobiDBLite consensus disorder prediction 430 451 - -
Aev09g0546 504 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 219 233 IPR018067 -
Aev09g0546 504 SUPERFAMILY WD40 repeat-like 39 496 IPR036322 GO:0005515
Aev09g0546 504 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 277 305 IPR000009 GO:0000159|GO:0019888
Aev09g0546 504 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Aev09g0546 504 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Aev09g0546 504 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 388 414 IPR000009 GO:0000159|GO:0019888
Aev09g0546 504 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 362 387 IPR000009 GO:0000159|GO:0019888
Aev09g0546 504 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 249 276 IPR000009 GO:0000159|GO:0019888
Aev09g0546 504 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 306 333 IPR000009 GO:0000159|GO:0019888
Aev09g0546 504 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 221 248 IPR000009 GO:0000159|GO:0019888
Aev09g0546 504 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Aev09g0546 504 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 334 361 IPR000009 GO:0000159|GO:0019888
Aev09g0546 504 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 473 502 IPR000009 GO:0000159|GO:0019888
Aev09g0546 504 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
Aev09g0546 504 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B 3 504 - -
Aev09g0546 504 SMART WD40_4 260 300 IPR001680 GO:0005515
Aev09g0546 504 SMART WD40_4 210 249 IPR001680 GO:0005515
Aev09g0546 504 SMART WD40_4 105 145 IPR001680 GO:0005515
Aev09g0546 504 SMART WD40_4 31 66 IPR001680 GO:0005515
Aev09g0546 504 Pfam WD domain, G-beta repeat 213 249 IPR001680 GO:0005515
Aev09g0546 504 Gene3D - 74 502 IPR015943 GO:0005515
Aev09g0546 504 PIRSF PPA2_B55 11 504 IPR000009 GO:0000159|GO:0019888
Aev09g0546 504 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 3 504 IPR000009 GO:0000159|GO:0019888
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g0546 Aev-Chr9 4872969 4879420 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g0546 K04354 - gmx:100799449 881.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev09g0546 09 4872969 4879420 Aev10g1644 10 18913607 18919259 ECH
Aev09g0546 09 4872969 4879420 Aev09g0546 09 4872969 4879420 ECH
Aev10g1644 10 18913607 18919259 Aev09g0546 09 4872969 4879420 PCT