Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0301 ATGGGATACGCCATTGTTTCCGAATCCTCCTCCAAACGGTTATTCTCTAACAAGAATTTCTTCGTCTTCAAGATAAGCTTCTCATGCTTACCTCGTCCGGGACTGAAATCATTATCAGCTACTAACACCGACTTGATGTCAGCGGCCGACAATGATTCCGGGGACACTAGGCCTCCTCCTCAGATTGGTCCACCCAACATGCATATCATAAAAGAAGATGACAAGCTCAGAGATGTTTTTGATCACTTGGACGTTGACAAAGACGGCAAGATTTCAAGCAGGGAACTAATGGACTATTTTGGGTCCGTAGGTGAGTCATCGATTAATCAGAAAGTAGCAAAAAGAGTGGTGAAGGAGTTTGACTCAGACGGAGACGAGTTGCTTGATTATGGGGACTTCGTGAGGCTAATGAAGGAAGAGGACAATGGGGAGTTGGAAAATGTTTTGAGGAGCGCGTTTGAGATGTTCGAGGCAGAGAAAGGGTGTGGGTGCATAACGCCCAAAGGGTTGCAGCAGATGTTGCGGCAGTTAGGGGAGGTCAAATCTCACGATGAGTGTGAGGCAATGATTCGAGCCTTCGATCTTGATGGCAACGGATTCCTTGATTTTCATGAATTTCAGCACATGATGTCACCTCCTACTTAA 645 0.4605 MGYAIVSESSSKRLFSNKNFFVFKISFSCLPRPGLKSLSATNTDLMSAADNDSGDTRPPPQIGPPNMHIIKEDDKLRDVFDHLDVDKDGKISSRELMDYFGSVGESSINQKVAKRVVKEFDSDGDELLDYGDFVRLMKEEDNGELENVLRSAFEMFEAEKGCGCITPKGLQQMLRQLGEVKSHDECEAMIRAFDLDGNGFLDFHEFQHMMSPPT* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0301 214 PANTHER CALCIUM BINDING PROTEIN 47 211 - -
Aev08g0301 214 PANTHER CALMODULIN 47 211 - -
Aev08g0301 214 Pfam EF-hand domain pair 74 138 IPR002048 GO:0005509
Aev08g0301 214 ProSiteProfiles EF-hand calcium-binding domain profile. 108 143 IPR002048 GO:0005509
Aev08g0301 214 MobiDBLite consensus disorder prediction 46 66 - -
Aev08g0301 214 Pfam EF hand 185 211 IPR002048 GO:0005509
Aev08g0301 214 ProSiteProfiles EF-hand calcium-binding domain profile. 181 214 IPR002048 GO:0005509
Aev08g0301 214 ProSiteProfiles EF-hand calcium-binding domain profile. 71 106 IPR002048 GO:0005509
Aev08g0301 214 ProSitePatterns EF-hand calcium-binding domain. 84 96 IPR018247 -
Aev08g0301 214 CDD EFh 149 211 IPR002048 GO:0005509
Aev08g0301 214 Gene3D - 141 213 - -
Aev08g0301 214 Gene3D - 70 140 - -
Aev08g0301 214 SMART efh_1 112 140 IPR002048 GO:0005509
Aev08g0301 214 SMART efh_1 75 103 IPR002048 GO:0005509
Aev08g0301 214 SMART efh_1 185 213 IPR002048 GO:0005509
Aev08g0301 214 ProSitePatterns EF-hand calcium-binding domain. 194 206 IPR018247 -
Aev08g0301 214 SUPERFAMILY EF-hand 71 211 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0301 Aev-Chr8 1641856 1642500 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g0301 9 211 EF-hand Containing Proteins AT3G50770 44.498 2.87e-48 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0301 K13448 - gmx:100775336 255.758
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g0301 08 1641856 1642500 Aev08g0301 08 1641856 1642500 ECH
Aev05g0555 05 3856404 3857021 Aev08g0301 08 1641856 1642500 ECH