Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g0555 ATGGCAACCGATAAGAGAATAATTCTAAAACCTTCCAAGTGGTTCTCCAACAAAGGCCTCCGAATCAGTTTTCATCGCCCAAGATCGTCATCGTCCAATTCATCATCATCATCAACGTTAGGCTCTCCTCGTTCCCCCACGTCACCCCCGTGTACCACTACTCCCAAGAACCCACATAGCACCAGAGAAGACGAGCTCATGGAGGTTTTCCGTCACTTCGACGGCAACGGAGATGGTAAAATCTCAGCCCTCGAATTGAGATCATATTTCGGATCCGTCGGCGAGTATTTGTCGCACGAGGAGGCTCAGGGGTTGATCCAAGACCTCGATTCCGATGGTGATGACTTGTTGGATATCAAAGATTTCACGAAGCTGATGAACGGTGGTGATGATGGGATGTTGCTGATGAACGGCGAGGATGATCTGAGAAAGGCCTTTGAGATGTTTGTGTGGGACAAAGGTTGCGAGTGCATTACCCCGAAAGGGTTGCAGAGGATGTTGCACCGACTTGGTGATGATAAGTCTTATGATGAGTGTGTGGCCATGATTGGTGCCTTTGATATTGATCACAACGGTGTTCTTGATTTCAATGAGTTTCACCAAATGATGATGCCTTAA 618 0.4757 MATDKRIILKPSKWFSNKGLRISFHRPRSSSSNSSSSSTLGSPRSPTSPPCTTTPKNPHSTREDELMEVFRHFDGNGDGKISALELRSYFGSVGEYLSHEEAQGLIQDLDSDGDDLLDIKDFTKLMNGGDDGMLLMNGEDDLRKAFEMFVWDKGCECITPKGLQRMLHRLGDDKSYDECVAMIGAFDIDHNGVLDFNEFHQMMMP* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g0555 205 ProSitePatterns EF-hand calcium-binding domain. 187 199 IPR018247 -
Aev05g0555 205 Pfam EF-hand domain pair 64 126 IPR002048 GO:0005509
Aev05g0555 205 MobiDBLite consensus disorder prediction 24 62 - -
Aev05g0555 205 CDD EFh 141 204 IPR002048 GO:0005509
Aev05g0555 205 ProSiteProfiles EF-hand calcium-binding domain profile. 61 96 IPR002048 GO:0005509
Aev05g0555 205 ProSitePatterns EF-hand calcium-binding domain. 110 122 IPR018247 -
Aev05g0555 205 Gene3D - 50 134 - -
Aev05g0555 205 Pfam EF-hand domain pair 157 203 IPR002048 GO:0005509
Aev05g0555 205 Gene3D - 136 205 - -
Aev05g0555 205 CDD EFh 65 107 IPR002048 GO:0005509
Aev05g0555 205 PANTHER CALCIUM BINDING PROTEIN 36 204 - -
Aev05g0555 205 ProSitePatterns EF-hand calcium-binding domain. 74 86 IPR018247 -
Aev05g0555 205 PANTHER CALCIUM-BINDING PROTEIN CML41-RELATED 36 204 - -
Aev05g0555 205 SMART efh_1 65 93 IPR002048 GO:0005509
Aev05g0555 205 SMART efh_1 178 204 IPR002048 GO:0005509
Aev05g0555 205 SMART efh_1 101 129 IPR002048 GO:0005509
Aev05g0555 205 MobiDBLite consensus disorder prediction 24 47 - -
Aev05g0555 205 ProSiteProfiles EF-hand calcium-binding domain profile. 174 205 IPR002048 GO:0005509
Aev05g0555 205 ProSiteProfiles EF-hand calcium-binding domain profile. 97 132 IPR002048 GO:0005509
Aev05g0555 205 SUPERFAMILY EF-hand 53 204 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g0555 Aev-Chr5 3856404 3857021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g0555 1 203 EF-hand Containing Proteins AT3G50770 51.185 2.39e-61 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g0555 K13448 - gmx:100306370 238.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g0555 05 3856404 3857021 Aev05g0555 05 3856404 3857021 ECH
Aev05g0555 05 3856404 3857021 Aev08g0301 08 1641856 1642500 ECH